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L3_121_000G1_scaffold_393

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_393_1
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..2062
DNA (2061bp) protein (687aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
pheT; Phenylalanine-tRNA ligase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LXU9_9FIRM
L3_121_000G1_scaffold_393_2
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2150..2401
DNA (252bp) protein (84aa)
YD repeat protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP90_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23726.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_121_000G1_scaffold_393_3
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2566..2934)
DNA (369bp) protein (123aa)
Putative transcriptional regulator n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GTY9_CLOLD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ADK16802.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L3_121_000G1_scaffold_393_4
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3101..3958)
DNA (858bp) protein (286aa)
fabG; 3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.268)
Oxidoreductase, short chain dehydrogenase/reductase family protein (Fragment) n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GE42_9ACTN
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EEA89460.1}; Flags: Fragment;; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_121_000G1_scaffold_393_5
unknown

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comp(4065..4751)
DNA (687bp) protein (229aa)

This feature has no annotations

L3_121_000G1_scaffold_393_6
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(4819..5391)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WDV3_FUSMR
Uncharacterized protein {ECO:0000313|EMBL:EEO36059.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;"
L3_121_000G1_scaffold_393_7
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5754..6641)
DNA (888bp) protein (296aa)
33 kDa chaperonin n=1 Tax=Clostridium sp. CAG:242 RepID=R6CQ98_9CLOT
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
Disulfide bond chaperones of the HSP33 family
L3_121_000G1_scaffold_393_8
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6653..7411)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64118.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_121_000G1_scaffold_393_9
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7411..7701)
DNA (291bp) protein (97aa)
TrpR family protein YerC/YecD n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFR2_9CLOT
TrpR family protein YerC/YecD {ECO:0000313|EMBL:CDA63093.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
TrpR homolog YerC/YecD
L3_121_000G1_scaffold_393_10
unknown

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comp(7746..7838)
DNA (93bp) protein (31aa)

This feature has no annotations

L3_121_000G1_scaffold_393_11
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7865..8470)
DNA (606bp) protein (202aa)
Probable GTP-binding protein EngB n=1 Tax=Clostridium sp. CAG:242 RepID=R6D117_9CLOT
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ribosome biogenesis GTP-binding protein YsxC
L3_121_000G1_scaffold_393_12
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8480..10978)
DNA (2499bp) protein (833aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
lon; Lon protease (EC:3.4.21.53)
Lon protease n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZV8_9FIRM
L3_121_000G1_scaffold_393_13
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11110..11655)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RSY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGK89995.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
alkyl hydroperoxide reductase
L3_121_000G1_scaffold_393_14
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11852..13147)
DNA (1296bp) protein (432aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7L7_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
L3_121_000G1_scaffold_393_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(13229..13810)
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCW2_9FIRM
L3_121_000G1_scaffold_393_16
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13860..15269)
DNA (1410bp) protein (470aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Trigger factor n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DC42_CLOS4
trigger factor
L3_121_000G1_scaffold_393_17
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15414..16109)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M7S6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63917.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
conserved hypothetical protein
L3_121_000G1_scaffold_393_18
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16266..16490
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6TNK3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24479.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_121_000G1_scaffold_393_19
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(16572..18059)
DNA (1488bp) protein (496aa)
thrC; Threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LLT8_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDB88428.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_121_000G1_scaffold_393_20
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18081..19013)
DNA (933bp) protein (311aa)
Zn-dependent dipeptidase, microsomal dipeptidase homolog (EC:3.4.13.19)
Zn-dependent dipeptidase, microsomal dipeptidase homolog {ECO:0000313|EMBL:CBL40643.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CBL40643.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Zn-dependent dipeptidase, microsomal dipeptidase homolog n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GS67_9FIRM
L3_121_000G1_scaffold_393_21
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18994..19374)
DNA (381bp) protein (127aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Ribonuclease n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUX2_9CLOT
conserved hypothetical protein TIGR00252
L3_121_000G1_scaffold_393_22
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19371..19979)
DNA (609bp) protein (203aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XWP1_9FIRM
L3_121_000G1_scaffold_393_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19991..20821)
DNA (831bp) protein (277aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW13_9FIRM
Histidinol phosphate phosphatase HisJ family protein {ECO:0000313|EMBL:EHL67420.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_121_000G1_scaffold_393_24
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20826..21716)
DNA (891bp) protein (297aa)
Ribosome biogenesis GTPase A n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZG0_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
conserved hypothetical protein
L3_121_000G1_scaffold_393_25
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21962..22303)
DNA (342bp) protein (114aa)
50S ribosomal protein L19 n=1 Tax=Ruminococcus albus 8 RepID=E9SG72_RUMAL
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
ribosomal protein L19
L3_121_000G1_scaffold_393_26
Clostridium sp. CAG:609, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22707..23558
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:609 RepID=R7P7R5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF20328.1}; TaxID=1262827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:609.;"
hypothetical protein
L3_121_000G1_scaffold_393_27
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

23610..24704
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y9E0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13028.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
glycosyltransferase
L3_121_000G1_scaffold_393_28
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(24786..25190)
DNA (405bp) protein (135aa)
Response regulator receiver protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HVN4_9FIRM
Response regulator receiver protein {ECO:0000313|EMBL:CCY28541.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
L3_121_000G1_scaffold_393_29
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26036..26722
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VM92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16007.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Predicted membrane protein
L3_121_000G1_scaffold_393_30
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26811..27938)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CNP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA77295.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
Displaying items 1-30 of 78 in total

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