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L3_121_000G1_scaffold_3225

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_3225_1
unknown

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comp(3..113)
DNA (111bp) protein (37aa)

This feature has no annotations

L3_121_000G1_scaffold_3225_2
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(227..859)
DNA (633bp) protein (211aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
upp; Uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:169 RepID=R6B9V0_9CLOT
L3_121_000G1_scaffold_3225_3
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(905..1342)
DNA (438bp) protein (146aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6)
Sugar-phosphate isomerase RpiB/LacA/LacB family n=1 Tax=Clostridium sp. CAG:242 RepID=R6D2Z8_9CLOT
Sugar-phosphate isomerase RpiB/LacA/LacB family {ECO:0000313|EMBL:CDA78416.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L3_121_000G1_scaffold_3225_4
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1348..2061)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N805_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC02416.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
peptidase M22 glycoprotease
L3_121_000G1_scaffold_3225_5
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2058..2489)
DNA (432bp) protein (144aa)
YjeE family ATPase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L9W4_9FIRM
YjeE family ATPase {ECO:0000313|EMBL:EOS55353.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
conserved hypothetical protein
L3_121_000G1_scaffold_3225_6
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2529..4274)
DNA (1746bp) protein (582aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LHY4_9FIRM
L3_121_000G1_scaffold_3225_7
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4436..5554
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LAG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS55351.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Bacterial cell division membrane protein
L3_121_000G1_scaffold_3225_8
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5775..7190
DNA (1416bp) protein (472aa)
Bifunctional protein GlmU n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LM34_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
UDP-N-acetylglucosamine pyrophosphorylase
L3_121_000G1_scaffold_3225_9
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7195..8154
DNA (960bp) protein (320aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
prs1; ribose-phosphate pyrophosphokinase Prs (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Clostridium sp. CAG:169 RepID=R6C890_9CLOT
L3_121_000G1_scaffold_3225_10
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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8291..8893
DNA (603bp) protein (201aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZHY6_9FIRM
L3_121_000G1_scaffold_3225_11
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8907..9335
DNA (429bp) protein (143aa)
hypothetical protein (EC:2.3.1.-)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q5X0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC32083.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
L3_121_000G1_scaffold_3225_12
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9367..12822
DNA (3456bp) protein (1152aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
mfd; Transcription-repair-coupling factor (EC:3.6.4.-)
Transcription-repair-coupling factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG14_9FIRM
L3_121_000G1_scaffold_3225_13
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12980..14050
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DNS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA79497.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
Displaying 13 items

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