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L3_121_243G1_scaffold_106

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_106_1
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..621
DNA (621bp) protein (207aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Trigger factor n=1 Tax=Clostridium sp. CAG:343 RepID=R6NL64_9CLOT
trigger factor
L3_121_243G1_scaffold_106_2
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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938..1543
DNA (606bp) protein (202aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Clostridium sp. CAG:343 RepID=R6PAS9_9CLOT
L3_121_243G1_scaffold_106_3
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1624..2949
DNA (1326bp) protein (442aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4L5_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
endopeptidase Clp ATP-binding regulatory subunit ClpX
L3_121_243G1_scaffold_106_4
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3366..5618
DNA (2253bp) protein (751aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
Primosomal protein N n=1 Tax=Clostridium sp. CAG:389 RepID=R7LPW2_9CLOT
replication restart DNA helicase PriA
L3_121_243G1_scaffold_106_5
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5780..6274
DNA (495bp) protein (165aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
def1; peptide deformylase 1 (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N458_9CLOT
L3_121_243G1_scaffold_106_6
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6444..7403
DNA (960bp) protein (320aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. CAG:440 RepID=R7GBT6_9CLOT
methionyl-tRNA formyltransferase
L3_121_243G1_scaffold_106_7
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7572..8087
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06821.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_121_243G1_scaffold_106_8
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8230..8502
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N6U5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06820.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L3_121_243G1_scaffold_106_9
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8544..8747
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NEK6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06819.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L3_121_243G1_scaffold_106_10
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8763..9173
DNA (411bp) protein (137aa)
N utilization substance protein B homolog n=1 Tax=Clostridium sp. CAG:343 RepID=R6N454_9CLOT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
NusB antitermination factor
L3_121_243G1_scaffold_106_11
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9384..10577
DNA (1194bp) protein (398aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Clostridium sp. CAG:389 RepID=R7LSE2_9CLOT
exodeoxyribonuclease VII large subunit
L3_121_243G1_scaffold_106_12
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10787..11008
DNA (222bp) protein (74aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEC0_9CLOT
exodeoxyribonuclease VII small subunit
L3_121_243G1_scaffold_106_13
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11082..11522
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N6T8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06815.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_121_243G1_scaffold_106_14
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11674..13335
DNA (1662bp) protein (554aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
fhs1; formyl-tetrahydrofolate synthetase Fhs (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NEK0_9CLOT
L3_121_243G1_scaffold_106_15
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13380..13580
DNA (201bp) protein (67aa)
Predicted Zn-ribbon nucleic-acid-binding protein n=2 Tax=Clostridium RepID=D8GTF1_CLOLD
Zn-ribbon nucleic-acid-binding protein
Uncharacterized protein {ECO:0000313|EMBL:AGY77841.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L3_121_243G1_scaffold_106_16
Clostridium sp. CAG:914, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13682..14239
DNA (558bp) protein (186aa)
NUDIX hydrolase n=1 Tax=Clostridium sp. CAG:914 RepID=R7M549_9CLOT
NUDIX hydrolase {ECO:0000313|EMBL:CDE96184.1}; TaxID=1262846 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:914.;"
NUDIX hydrolase
L3_121_243G1_scaffold_106_17
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14348..14656)
DNA (309bp) protein (103aa)
Predicted carboxypeptidase (EC:3.4.19.11)
Gamma-D-glutamyl-(L)-meso-diaminopimelate peptidase I metallo peptidase MEROPS family M14C n=1 Tax=Clostridium sp. CAG:343 RepID=R6N2Q7_9CLOT
Gamma-D-glutamyl-(L)-meso-diaminopimelate peptidase I metallo peptidase MEROPS family M14C {ECO:0000313|EMBL:CDC06298.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L3_121_243G1_scaffold_106_18
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14878..15273)
DNA (396bp) protein (132aa)
Gamma-D-glutamyl-(L)-meso-diaminopimelate peptidase I metallo peptidase MEROPS family M14C n=1 Tax=Clostridium sp. CAG:440 RepID=R7GGL2_9CLOT
Gamma-D-glutamyl-(L)-meso-diaminopimelate peptidase I metallo peptidase MEROPS family M14C {ECO:0000313|EMBL:CDE25948.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
zinc carboxypeptidase family protein
L3_121_243G1_scaffold_106_19
Clostridium sp. CAG:273, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15404..15721
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:273 RepID=R7L896_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE83437.1}; TaxID=1262789 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:273.;"
prevent-host-death family protein
L3_121_243G1_scaffold_106_20
Clostridium sp. CAG:273, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15678..15989
DNA (312bp) protein (104aa)
Toxin-antitoxin system toxin component RelE family n=1 Tax=Clostridium sp. CAG:273 RepID=R7L632_9CLOT
Toxin-antitoxin system toxin component RelE family {ECO:0000313|EMBL:CDE83438.1}; TaxID=1262789 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:273.;"
putative RelE/StbE family addiction module toxin
L3_121_243G1_scaffold_106_21
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16192..16782
DNA (591bp) protein (197aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
sodF; Mn/Fe superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase n=1 Tax=Clostridium sp. CAG:356 RepID=R7A104_9CLOT
L3_121_243G1_scaffold_106_22
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17681..18571
DNA (891bp) protein (297aa)
Glycosyl transferase family 2 n=1 Tax=Clostridium sp. CAG:343 RepID=R6NFU4_9CLOT
Glycosyl transferase family 2 {ECO:0000313|EMBL:CDC07284.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
family 2 glycosyl transferase
L3_121_243G1_scaffold_106_23
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18644..20014
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FKY6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE15246.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
group 1 family glycosyl transferase
L3_121_243G1_scaffold_106_24
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20041..23196
DNA (3156bp) protein (1052aa)
epsJ3; glycosyltransferase EpsJ (EC:2.4.-.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F536_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE09965.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_121_243G1_scaffold_106_25
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23198..23941
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F5N3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE09966.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
lipopolysaccharide transport system ATP-binding protein
L3_121_243G1_scaffold_106_26
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23954..24730
DNA (777bp) protein (259aa)
O-antigen export system permease protein RfbA n=1 Tax=Clostridium sp. CAG:354 RepID=R7F8C1_9CLOT
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
lipopolysaccharide transport system permease
L3_121_243G1_scaffold_106_27
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24745..26697
DNA (1953bp) protein (651aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F5N8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE09971.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
Predicted membrane protein
L3_121_243G1_scaffold_106_28
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26950..29436
DNA (2487bp) protein (829aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sp. CAG:470 RepID=R7FIX5_9CLOT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDE14458.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
cell wall binding repeat-containing protein/zinc carboxypeptidase family protein
L3_121_243G1_scaffold_106_29
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29451..32960
DNA (3510bp) protein (1170aa)
lytC; 1,4-beta-N-acetylmuramidase (EC:3.4.24.76)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sp. CAG:354 RepID=R7F631_9CLOT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDE09973.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_121_243G1_scaffold_106_30
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33112..33729
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F3X2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE09974.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
Displaying items 1-30 of 98 in total

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