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L3_121_243G1_scaffold_109

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_109_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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218..976
DNA (759bp) protein (253aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=4 Tax=Parabacteroides RepID=A7ADM5_9PORP
L3_121_243G1_scaffold_109_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1008..2117
DNA (1110bp) protein (370aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6BPM3_9PORP
ATP-binding protein Mrp/Nbp35 family {ECO:0000313|EMBL:CDD13884.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Mrp/Nbp35 family ATP-binding protein
L3_121_243G1_scaffold_109_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2248..3738)
DNA (1491bp) protein (497aa)
Histidine ammonia-lyase {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026}; EC=4.3.1.3 {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Histidine ammonia-lyase n=2 Tax=Parabacteroides merdae RepID=A7ADM8_9PORP
histidine ammonia-lyase
L3_121_243G1_scaffold_109_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3751..4386)
DNA (636bp) protein (212aa)
Formiminotransferase-cyclodeaminase n=2 Tax=Parabacteroides merdae RepID=A7ADM9_9PORP
Formiminotransferase-cyclodeaminase {ECO:0000313|EMBL:EDN87171.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
formiminotransferase-cyclodeaminase
L3_121_243G1_scaffold_109_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4428..5678)
DNA (1251bp) protein (417aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Imidazolonepropionase n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B1Z2_9PORP
imidazolonepropionase
L3_121_243G1_scaffold_109_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5682..6566)
DNA (885bp) protein (295aa)
Glutamate formimidoyltransferase n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADN1_9PORP
Glutamate formimidoyltransferase {ECO:0000313|EMBL:EDN87173.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
formiminotransferase-cyclodeaminase
L3_121_243G1_scaffold_109_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6584..8587)
DNA (2004bp) protein (668aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BPM8_9PORP
L3_121_243G1_scaffold_109_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8763..11777)
DNA (3015bp) protein (1005aa)
Export membrane protein SecD n=3 Tax=Parabacteroides RepID=A7ADN3_9PORP
Export membrane protein SecD {ECO:0000313|EMBL:EDN87175.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
bifunctional preprotein translocase subunit SecD/SecF
L3_121_243G1_scaffold_109_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11942..12943
DNA (1002bp) protein (334aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADN4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87176.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_121_243G1_scaffold_109_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12948..13499
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADN5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87177.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_121_243G1_scaffold_109_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13585..14706)
DNA (1122bp) protein (374aa)
Endonuclease/exonuclease/phosphatase family protein n=2 Tax=Parabacteroides merdae RepID=A7ADN6_9PORP
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:EDN87178.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_121_243G1_scaffold_109_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14703..15581)
DNA (879bp) protein (293aa)
Peptidase S54 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X743_9PORP
Peptidase S54 family {ECO:0000313|EMBL:CDD12091.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rhomboid family protein
L3_121_243G1_scaffold_109_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15562..16350)
DNA (789bp) protein (263aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K6AQ07_9PORP
Peptidase S54 family {ECO:0000313|EMBL:CDD12092.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rhomboid family protein
L3_121_243G1_scaffold_109_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16459..16731
DNA (273bp) protein (91aa)
DNA-binding protein HU n=3 Tax=Parabacteroides merdae RepID=A7ADN9_9PORP
DNA-binding protein HU {ECO:0000313|EMBL:EDN87181.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA-binding protein HU-beta
L3_121_243G1_scaffold_109_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


16914..18707
DNA (1794bp) protein (598aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=2 Tax=Parabacteroides RepID=K5ZCD5_9PORP
L3_121_243G1_scaffold_109_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18725..19489
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Z051_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12095.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyl transferase, group 2 family protein
L3_121_243G1_scaffold_109_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19425..19691)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZZK9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08843.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_121_243G1_scaffold_109_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20107..22452)
DNA (2346bp) protein (782aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA topoisomerase 1 n=2 Tax=Parabacteroides merdae RepID=A7ADP3_9PORP
DNA topoisomerase I
L3_121_243G1_scaffold_109_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22602..22865
DNA (264bp) protein (88aa)
Tetratricopeptide repeat protein n=4 Tax=Parabacteroides RepID=A7ADP5_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDD12098.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
tetratricopeptide repeat protein
L3_121_243G1_scaffold_109_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22934..23746)
DNA (813bp) protein (271aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
nagB; glucosamine-6-phosphate deaminase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=4 Tax=Parabacteroides RepID=A7ADP6_9PORP
L3_121_243G1_scaffold_109_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23821..25017)
DNA (1197bp) protein (399aa)
Metallo-beta-lactamase domain protein n=3 Tax=Parabacteroides RepID=A7ADP7_9PORP
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDD12100.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
flavoprotein
L3_121_243G1_scaffold_109_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25054..25887)
DNA (834bp) protein (278aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Prolipoprotein diacylglyceryl transferase n=3 Tax=Parabacteroides merdae RepID=A7ADP8_9PORP
prolipoprotein diacylglyceryl transferase
L3_121_243G1_scaffold_109_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25983..26879)
DNA (897bp) protein (299aa)
Diaminopimelate dehydrogenase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y6P5_9PORP
Diaminopimelate dehydrogenase {ECO:0000313|EMBL:EKN08837.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
oxidoreductase
L3_121_243G1_scaffold_109_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27040..27687
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WLT1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12103.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two-component system response regulator
L3_121_243G1_scaffold_109_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27716..29521)
DNA (1806bp) protein (602aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WYY5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12104.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_121_243G1_scaffold_109_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29531..31561)
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y0V4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12107.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_121_243G1_scaffold_109_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31604..34405)
DNA (2802bp) protein (934aa)
Alpha-L-rhamnosidase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WYY8_9PORP
Alpha-L-rhamnosidase {ECO:0000313|EMBL:CDD12109.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
alpha-L-rhamnosidase
L3_121_243G1_scaffold_109_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34517..35599)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRW1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12110.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_121_243G1_scaffold_109_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35629..37452)
DNA (1824bp) protein (608aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X755_9PORP
SusD family protein {ECO:0000313|EMBL:CDD12111.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
SusD family.
L3_121_243G1_scaffold_109_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37464..40556)
DNA (3093bp) protein (1031aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WLU0_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD12113.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Outer membrane receptor proteins, mostly Fe transport
Displaying items 1-30 of 62 in total

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