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L3_121_243G1_scaffold_125

Search features with annotation key words

Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_125_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(840..2087)
DNA (1248bp) protein (416aa)
DNA-binding helix-turn-helix protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7S6_BIFBI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFR49668.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
transcriptional regulator
L3_121_243G1_scaffold_125_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2639..3358)
DNA (720bp) protein (240aa)
tam; trans-aconitate 2-methyl transferase (EC:2.1.1.144)
Trans-aconitate 2-methyl transferase {ECO:0000313|EMBL:AFL03879.1}; EC=2.1.1.144 {ECO:0000313|EMBL:AFL03879.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Trans-aconitate 2-methyl transferase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WG66_BIFBI
L3_121_243G1_scaffold_125_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3943..4173)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7S4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49666.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_121_243G1_scaffold_125_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4636..6447
DNA (1812bp) protein (604aa)
FadD Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:KFI42396.1}; EC=6.2.1.3 {ECO:0000313|EMBL:KFI42396.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
fadD; long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Putative long-chain-fatty-acid--CoA ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HB93_BIFBI
L3_121_243G1_scaffold_125_5
unknown

Not on your lists

comp(6584..7096)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5ECL9_BIFLI
L3_121_243G1_scaffold_125_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7636..8643)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WG59_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL03872.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_121_243G1_scaffold_125_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8710..9123)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CHH5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42394.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_121_243G1_scaffold_125_8
unknown

Not on your lists

9562..9717
DNA (156bp) protein (52aa)

This feature has no annotations

L3_121_243G1_scaffold_125_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10168..11358)
DNA (1191bp) protein (397aa)
aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase {ECO:0000313|EMBL:EKE49796.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EKE49796.1};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Aminotransferase n=4 Tax=Bifidobacterium RepID=E4NZB7_BIFBP
L3_121_243G1_scaffold_125_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11466..12740
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GAY9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22588.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_121_243G1_scaffold_125_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12903..13553
DNA (651bp) protein (217aa)
Transcriptional regulator n=5 Tax=Bifidobacterium RepID=E4NZB5_BIFBP
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ADO52514.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_243G1_scaffold_125_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13616..14389
DNA (774bp) protein (258aa)
Conserved hypothetical membrane spanning protein, putative mechanosensitive ion channel n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENM1_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein, putative mechanosensitive ion channel {ECO:0000313|EMBL:ADO52513.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_243G1_scaffold_125_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14684..17347)
DNA (2664bp) protein (888aa)
ATP-binding subunit of Clp protease n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENM0_BIFBS
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
clpB; ATP-binding subunit of Clp protease
L3_121_243G1_scaffold_125_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17637..18284
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DM72_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82637.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_121_243G1_scaffold_125_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18178..18993)
DNA (816bp) protein (272aa)
Fumarylacetoacetate (FAA) hydrolase n=2 Tax=Bifidobacterium bifidum RepID=E3ENL8_BIFBS
putative 2-hydroxyhepta-2,4-diene-1,7-dioateisomerase
Putative 2-hydroxyhepta-2, 4-diene-1, 7-dioateisomerase {ECO:0000313|EMBL:AFL03865.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_121_243G1_scaffold_125_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19108..20487)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HS14_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50138.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
protocadherin domain
L3_121_243G1_scaffold_125_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20752..21930)
DNA (1179bp) protein (393aa)
Putative sortase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WG50_BIFBI
Sortase {ECO:0000313|EMBL:KFI42386.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
srtA; putative sortase
L3_121_243G1_scaffold_125_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22115..23719)
DNA (1605bp) protein (535aa)
Fimbrial subunit FimA n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZA9_BIFBP
fimA; fimbrial subunit FimA
Fimbrial subunit FimA {ECO:0000313|EMBL:EKF16183.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_243G1_scaffold_125_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23881..27342)
DNA (3462bp) protein (1154aa)
von Willebrand factor A n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976EAB
cell surface protein
Cell surface protein with gram positive anchor domain {ECO:0000313|EMBL:KFI42384.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_243G1_scaffold_125_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28066..28446)
DNA (381bp) protein (127aa)
acyP; acylphosphatase (EC:3.6.1.7)
Acylphosphatase {ECO:0000256|RuleBase:RU000553}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Acylphosphatase n=4 Tax=Bifidobacterium RepID=E3ENL3_BIFBS
L3_121_243G1_scaffold_125_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28587..29411)
DNA (825bp) protein (275aa)
Alanine racemase n=2 Tax=Bifidobacterium bifidum RepID=E3ENL2_BIFBS
hypothetical protein
Alanine racemase {ECO:0000313|EMBL:EKF16186.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_243G1_scaffold_125_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29592..30737)
DNA (1146bp) protein (382aa)
tRNA ligase class I, catalytic domain protein n=2 Tax=Bifidobacterium RepID=U2DSD2_BIFBI
Putative glutamyl-tRNA synthase {ECO:0000313|EMBL:BAQ97491.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
gluQ; glutamyl-Q tRNA(Asp) synthetase
L3_121_243G1_scaffold_125_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30770..31588)
DNA (819bp) protein (273aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=U2DM83_BIFBI
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KFI42380.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_243G1_scaffold_125_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31789..32541)
DNA (753bp) protein (251aa)
Channel protein, MIP family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CF50_BIFBI
Channel protein, MIP family {ECO:0000313|EMBL:ERI82648.1}; Glycerol uptake facilitator protein {ECO:0000313|EMBL:BAQ97489.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
glpF; putative glycerol uptake facilitator protein
L3_121_243G1_scaffold_125_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33402..33926)
DNA (525bp) protein (175aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V7Q1_BIFBI
Putative cell surface protein {ECO:0000313|EMBL:BAQ97488.1}; Uncharacterized protein {ECO:0000313|EMBL:ERI82650.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
chitinase A
L3_121_243G1_scaffold_125_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33923..34672)
DNA (750bp) protein (250aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WG41_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42378.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_243G1_scaffold_125_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34705..35016
DNA (312bp) protein (104aa)
Tat pathway signal sequence domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DM90_BIFBI
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:ERI82652.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_243G1_scaffold_125_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34912..35136)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WG40_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL03853.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_121_243G1_scaffold_125_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(35603..36049)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=5 Tax=Bifidobacterium RepID=E3ENK6_BIFBS
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_243G1_scaffold_125_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(36067..36315)
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=7 Tax=Bifidobacterium RepID=E3ENK5_BIFBS
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 141 in total

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