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L3_121_243G1_scaffold_253

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_253_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..562
DNA (561bp) protein (187aa)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E863_BIFLI
galactose-1-phosphate uridylyltransferase
Galt1 {ECO:0000313|EMBL:AEI98037.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L3_121_243G1_scaffold_253_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

579..1829
DNA (1251bp) protein (417aa)
Galactokinase n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GUW8_BIFLN
Galactokinase {ECO:0000256|SAAS:SAAS00025843}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
galactokinase
L3_121_243G1_scaffold_253_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1912..2184
DNA (273bp) protein (91aa)
UPF0237 protein BL1209.1 n=14 Tax=Bifidobacterium RepID=YC0A_BIFLO
hypothetical protein
UPF0237 protein HMPREF0175_0815 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_121_243G1_scaffold_253_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2320..3684
DNA (1365bp) protein (455aa)
UPF0210 protein BL1209 n=14 Tax=Bifidobacterium RepID=Y1209_BIFLO
hypothetical protein
UPF0210 protein HMPREF0175_0814 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_121_243G1_scaffold_253_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3991..4653)
DNA (663bp) protein (221aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=12 Tax=Bifidobacterium RepID=B3DTE5_BIFLD
cspR; cspr
L3_121_243G1_scaffold_253_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4674..5660
DNA (987bp) protein (329aa)
A/G-specific DNA glycosylase n=10 Tax=Bifidobacterium RepID=B3DTE4_BIFLD
adenine glycosylase
Putative adenine glycosylase {ECO:0000313|EMBL:BAJ70564.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_121_243G1_scaffold_253_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5725..6447
DNA (723bp) protein (241aa)
Uncharacterized protein n=10 Tax=Bifidobacterium RepID=B3DTE3_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ21868.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_121_243G1_scaffold_253_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6602..10165
DNA (3564bp) protein (1188aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
DNA-directed RNA polymerase subunit beta n=9 Tax=Bifidobacterium RepID=RPOB_BIFLO
rpoB; rpob
L3_121_243G1_scaffold_253_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10333..14319
DNA (3987bp) protein (1329aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
DNA-directed RNA polymerase subunit beta' n=13 Tax=Bacteria RepID=RPOC_BIFLD
rpoC; rpoc
L3_121_243G1_scaffold_253_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14478..15110)
DNA (633bp) protein (211aa)
Forkhead domain protein n=14 Tax=Bacteria RepID=E4R014_BIFLM
hypothetical protein
Signal peptide protein {ECO:0000313|EMBL:AIW43402.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_121_243G1_scaffold_253_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15126..15641)
DNA (516bp) protein (172aa)
Uncharacterized protein n=5 Tax=Bifidobacterium longum RepID=C5E852_BIFLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEQ54250.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_121_243G1_scaffold_253_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15668..16600)
DNA (933bp) protein (311aa)
Phosphatase n=10 Tax=Bifidobacterium longum RepID=F8ASE6_BIFLN
phosphatase
Protein phosphatase {ECO:0000313|EMBL:KEY23323.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_121_243G1_scaffold_253_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16597..19110)
DNA (2514bp) protein (838aa)
Transglutaminase like protein n=2 Tax=Bifidobacterium longum RepID=S3DM16_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP83113.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L3_121_243G1_scaffold_253_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19107..20282)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=B3DTD6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98405.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_121_243G1_scaffold_253_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20355..21710)
DNA (1356bp) protein (452aa)
MoxR-like ATPases (EC:3.6.3.-)
MoxR-like ATPases {ECO:0000313|EMBL:CBK70903.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBK70903.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
MoxR-like ATPases n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6D9Q0_BIFLN
L3_121_243G1_scaffold_253_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21721..27705)
DNA (5985bp) protein (1995aa)
Putative adhesin n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MS30_BIFL1
Putative adhesin {ECO:0000313|EMBL:BAJ70574.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
adhesin
L3_121_243G1_scaffold_253_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27872..29293)
DNA (1422bp) protein (474aa)
Serine/threonine protein kinase n=13 Tax=Bifidobacterium RepID=B3DTD3_BIFLD
Kinase domain protein {ECO:0000313|EMBL:BAP83117.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
kinase
L3_121_243G1_scaffold_253_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29425..33735
DNA (4311bp) protein (1437aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum subsp. longum RepID=C2GUV2_BIFLN
PD-(D/E)XK nuclease family protein {ECO:0000313|EMBL:EIJ32285.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
hypothetical protein
L3_121_243G1_scaffold_253_19
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33732..37763
DNA (4032bp) protein (1344aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
ATP-dependent DNA helicase, UvrD/REP family n=4 Tax=Bifidobacterium RepID=V6XUW4_BIFLN
uvrD3; superfamily I DNA and RNA helicase
L3_121_243G1_scaffold_253_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37976..39295
DNA (1320bp) protein (440aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=B3DTD0_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98399.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_121_243G1_scaffold_253_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39631..40386
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Bifidobacterium RepID=B3DTC9_BIFLD
dapB; dihydrodipicolinate reductase
L3_121_243G1_scaffold_253_22
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40528..41454
DNA (927bp) protein (309aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Bifidobacterium RepID=R5NBI0_9BIFI
dihydrodipicolinate synthase
L3_121_243G1_scaffold_253_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41497..43389
DNA (1893bp) protein (631aa)
Uncharacterized protein n=9 Tax=Bifidobacterium RepID=Q8G528_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24997.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_121_243G1_scaffold_253_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43431..46040
DNA (2610bp) protein (870aa)
Aminopeptidase N n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSW3_BIFLJ
aminopeptidase N
Aminopeptidase N {ECO:0000313|EMBL:ADG99968.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_121_243G1_scaffold_253_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

46217..47104
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=D6ZSW4_BIFLJ
hypothetical protein
Permease {ECO:0000313|EMBL:KEY33169.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_121_243G1_scaffold_253_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47303..47635
DNA (333bp) protein (111aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=Q8G531_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP83126.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L3_121_243G1_scaffold_253_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

48084..49469
DNA (1386bp) protein (462aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Phosphoglucosamine mutase n=14 Tax=Bifidobacterium RepID=GLMM_BIFLD
phosphomannomutase
L3_121_243G1_scaffold_253_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

49494..50147
DNA (654bp) protein (218aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Peptide deformylase 1 n=12 Tax=Bifidobacterium RepID=DEF1_BIFLO
def2; def2
L3_121_243G1_scaffold_253_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

50144..51625
DNA (1482bp) protein (494aa)
DNA polymerase III epsilon subunit n=3 Tax=Bifidobacterium longum RepID=B3DTC0_BIFLD
dnaQ; DNA polymerase III subunit epsilon
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:ACD98389.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_121_243G1_scaffold_253_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

52008..53132
DNA (1125bp) protein (375aa)
Peptide chain release factor 2 n=15 Tax=Bifidobacterium longum RepID=B3DTB9_BIFLD
prfB; peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
Displaying items 1-30 of 44 in total

View Taxonomy