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L3_121_243G1_scaffold_274

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Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_274_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26..337)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ05_9FIRM
TrpR-related protein YerC/YecD {ECO:0000313|EMBL:KJF41059.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
TrpR-related protein YerC/YecD
L3_121_243G1_scaffold_274_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(516..1436)
DNA (921bp) protein (307aa)
Elongation factor Ts n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ06_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
translation elongation factor Ts (EF-Ts)
L3_121_243G1_scaffold_274_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1458..2189)
DNA (732bp) protein (244aa)
30S ribosomal protein S2 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ07_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
SSU ribosomal protein S2P
L3_121_243G1_scaffold_274_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2354..4285)
DNA (1932bp) protein (644aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64315.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L3_121_243G1_scaffold_274_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4358..4633)
DNA (276bp) protein (92aa)
YlmC/YmxH family sporulation protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ09_9FIRM
YlmC/YmxH family sporulation protein {ECO:0000313|EMBL:EHL64316.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
sporulation protein, YlmC/YmxH family
L3_121_243G1_scaffold_274_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4888..5505
DNA (618bp) protein (206aa)
HAD hydrolase, family IA n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ10_9FIRM
HAD hydrolase, family IA {ECO:0000313|EMBL:EHL64317.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_121_243G1_scaffold_274_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5788..6558)
DNA (771bp) protein (257aa)
RNA polymerase sigma factor n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ11_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
RNA polymerase, sigma subunit, RpsG/SigG
L3_121_243G1_scaffold_274_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6674..7399)
DNA (726bp) protein (242aa)
RNA polymerase sigma factor n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ12_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
RNA polymerase, sigma 29 subunit, SigE
L3_121_243G1_scaffold_274_9
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7483..8355)
DNA (873bp) protein (291aa)
Sigma-E processing peptidase SpoIIGA n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41064.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
sigma-E processing peptidase SpoIIGA
L3_121_243G1_scaffold_274_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8549..10972
DNA (2424bp) protein (808aa)
HAD ATPase, P-type, family IC n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ14_9FIRM
Hydrolase {ECO:0000313|EMBL:KJF41065.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_121_243G1_scaffold_274_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11180..12295
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64322.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
XRE family transcriptional regulator
L3_121_243G1_scaffold_274_12
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12686..13330
DNA (645bp) protein (215aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=C5ERB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41066.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_121_243G1_scaffold_274_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13628..16015)
DNA (2388bp) protein (796aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Endonuclease MutS2 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ18_9FIRM
MutS2 family protein
L3_121_243G1_scaffold_274_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16316..17056)
DNA (741bp) protein (247aa)
DNA repair protein RecO n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ19_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
DNA replication and repair protein RecO
L3_121_243G1_scaffold_274_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17001..17153)
DNA (153bp) protein (51aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64225.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_121_243G1_scaffold_274_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17267..18169)
DNA (903bp) protein (301aa)
GTPase Era n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ21_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
era; GTPase Era
L3_121_243G1_scaffold_274_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18170..18631)
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64227.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
diacylglycerol kinase
L3_121_243G1_scaffold_274_18
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18633..19130)
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Endoribonuclease YbeY n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ23_9FIRM
conserved hypothetical protein TIGR00043
L3_121_243G1_scaffold_274_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19145..20110)
DNA (966bp) protein (322aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64229.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_121_243G1_scaffold_274_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20509..21717)
DNA (1209bp) protein (403aa)
Sporulation protein YqfD n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ25_9FIRM
Sporulation protein YqfD {ECO:0000313|EMBL:EHL64230.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
yqfD; YqfD
L3_121_243G1_scaffold_274_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21714..22025)
DNA (312bp) protein (104aa)
Sporulation protein YqfC n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ26_9FIRM
Sporulation protein YqfC {ECO:0000313|EMBL:EHL64231.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_121_243G1_scaffold_274_22
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22089..23249
DNA (1161bp) protein (387aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64232.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_121_243G1_scaffold_274_23
unknown

Not on your lists

comp(23126..23671)
DNA (546bp) protein (182aa)

This feature has no annotations

L3_121_243G1_scaffold_274_24
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23668..24363)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64234.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_121_243G1_scaffold_274_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24544..24753
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64235.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
transcriptional regulator
L3_121_243G1_scaffold_274_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24754..25224
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64236.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_121_243G1_scaffold_274_27
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25239..25445
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64237.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_121_243G1_scaffold_274_28
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25516..27252)
DNA (1737bp) protein (579aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ33_9FIRM
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF41078.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type multidrug transport system, ATPase and permease components
L3_121_243G1_scaffold_274_29
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27249..28982)
DNA (1734bp) protein (578aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64239.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_121_243G1_scaffold_274_30
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29177..29854
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ35_9FIRM
PhoB family transcriptional regulator {ECO:0000313|EMBL:KJF41080.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
winged helix family two component transcriptional regulator
Displaying items 1-30 of 64 in total

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