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L3_121_243G1_scaffold_348

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_348_1
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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95..1816
DNA (1722bp) protein (574aa)
Leucine Rich Repeat domain protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VM60_9CYAN
Leucine Rich Repeat domain protein {ECO:0000313|EMBL:EDX76955.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthonoplastes PCC 7420.;"
internalin-A
L3_121_243G1_scaffold_348_2
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2006..3259)
DNA (1254bp) protein (418aa)
HtrA2 peptidase (EC:3.4.21.108)
Trypsin-like serine protease with C-terminal PDZ domain n=1 Tax=Clostridium sp. CAG:343 RepID=R6N7L4_9CLOT
Trypsin-like serine protease with C-terminal PDZ domain {ECO:0000313|EMBL:CDC07075.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L3_121_243G1_scaffold_348_3
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3572..4123
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEJ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE25436.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
L3_121_243G1_scaffold_348_4
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4222..4869
DNA (648bp) protein (216aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:343 RepID=R6PB37_9CLOT
L3_121_243G1_scaffold_348_5
Clostridium sp. CAG:575, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5026..5394
DNA (369bp) protein (123aa)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Clostridium sp. CAG:575 RepID=R6HH50_9CLOT
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:CDB32676.1}; TaxID=1262823 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:575.;"
pdp; pyrimidine-nucleoside phosphorylase
L3_121_243G1_scaffold_348_6
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5351..6331
DNA (981bp) protein (327aa)
pdp; Pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Clostridium sp. CAG:389 RepID=R7LPL3_9CLOT
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:CDE90056.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
L3_121_243G1_scaffold_348_7
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6526..6654
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:389 RepID=R7LRR6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE90057.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
L3_121_243G1_scaffold_348_8
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6673..7623
DNA (951bp) protein (317aa)
TIGR00159 family protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NFC6_9CLOT
TIGR00159 family protein {ECO:0000313|EMBL:CDC07079.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_121_243G1_scaffold_348_9
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7810..8550
DNA (741bp) protein (247aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. CAG:343 RepID=R6N7L5_9CLOT
pseudouridylate synthase I
L3_121_243G1_scaffold_348_10
Clostridium sp. CAG:575, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8615..9307
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:575 RepID=R6I3M5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB32672.1}; TaxID=1262823 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:575.;"
L3_121_243G1_scaffold_348_11
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9496..10353
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PB41_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC07082.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_121_243G1_scaffold_348_12
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10481..12811)
DNA (2331bp) protein (777aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4V7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC07083.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
TraG/TraD
L3_121_243G1_scaffold_348_13
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13138..13431
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NFD0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC07084.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L3_121_243G1_scaffold_348_14
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13478..13768
DNA (291bp) protein (97aa)
Pro-sigmaK processing inhibitor BofA n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEK4_9CLOT
Pro-sigmaK processing inhibitor BofA {ECO:0000313|EMBL:CDE25446.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
sigmaK-factor processing regulatory BofA
L3_121_243G1_scaffold_348_15
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13894..15735)
DNA (1842bp) protein (614aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Clostridium sp. CAG:343 RepID=R6NLF7_9CLOT
L3_121_243G1_scaffold_348_16
unknown

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16117..17157
DNA (1041bp) protein (347aa)

This feature has no annotations

L3_121_243G1_scaffold_348_17
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17408..19201
DNA (1794bp) protein (598aa)
UvrABC system protein C n=1 Tax=Clostridium sp. CAG:343 RepID=R6N306_9CLOT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
uvrC; excinuclease ABC subunit C
L3_121_243G1_scaffold_348_18
unknown

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comp(19442..19615)
DNA (174bp) protein (58aa)

This feature has no annotations

L3_121_243G1_scaffold_348_19
unknown

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19794..20045
DNA (252bp) protein (84aa)

This feature has no annotations

L3_121_243G1_scaffold_348_20
unknown

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20187..20399
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NJG5_9CLOT
L3_121_243G1_scaffold_348_21
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20560..21444
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:389 RepID=R7LPN8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE90081.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
putative SAM-dependent methyltransferase
L3_121_243G1_scaffold_348_22
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21432..22112
DNA (681bp) protein (227aa)
23S RNA-specific pseudouridylate synthase n=1 Tax=Clostridium sp. CAG:470 RepID=R7FI64_9CLOT
23S RNA-specific pseudouridylate synthase {ECO:0000313|EMBL:CDE14560.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
pseudouridylate synthase
L3_121_243G1_scaffold_348_23
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22389..23000
DNA (612bp) protein (204aa)
Accessory gene regulator B n=1 Tax=Clostridium sp. CAG:440 RepID=R7GF61_9CLOT
Accessory gene regulator B {ECO:0000313|EMBL:CDE25453.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
Accessory gene regulator B
L3_121_243G1_scaffold_348_24
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23046..23165
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NIS0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06146.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L3_121_243G1_scaffold_348_25
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23370..24716)
DNA (1347bp) protein (449aa)
Histidine kinase n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8D2_9CLOT
Histidine kinase {ECO:0000313|EMBL:CDC06147.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
histidine kinase
L3_121_243G1_scaffold_348_26
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24700..25413)
DNA (714bp) protein (238aa)
DNA-binding response regulator LytTr family n=1 Tax=Clostridium sp. CAG:389 RepID=R7LPP2_9CLOT
DNA-binding response regulator LytTr family {ECO:0000313|EMBL:CDE90086.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
LytTr family DNA-binding response regulator
L3_121_243G1_scaffold_348_27
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25722..26549
DNA (828bp) protein (276aa)
Delta-lactam-biosynthetic de-N-acetylase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NCW2_9CLOT
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:CDC06154.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
delta-lactam-biosynthetic de-N-acetylase
L3_121_243G1_scaffold_348_28
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26647..26943
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:440 RepID=R7GDJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE25459.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
sporulation protein YqfC
L3_121_243G1_scaffold_348_29
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27145..28329
DNA (1185bp) protein (395aa)
Sporulation protein YqfD n=1 Tax=Clostridium sp. CAG:343 RepID=R6NIT4_9CLOT
Sporulation protein YqfD {ECO:0000313|EMBL:CDC06156.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
yqfD; YqfD
L3_121_243G1_scaffold_348_30
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28343..29563
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8E1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06157.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Displaying items 1-30 of 78 in total

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