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L3_121_243G1_scaffold_514

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_514_1
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..174)
DNA (174bp) protein (58aa)
ABC transporter, permease protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BV17_9BIFI
Sugar ABC transporter permease component {ECO:0000313|EMBL:BAR02415.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
ABC transporter, permease protein
L3_121_243G1_scaffold_514_2
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(459..1820)
DNA (1362bp) protein (454aa)
ABC transporter, solute-binding protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSL9_9BIFI
Sugar ABC transporter substrate binding component {ECO:0000313|EMBL:BAR02416.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
sugars ABC transporter substrate-binding protein
L3_121_243G1_scaffold_514_3
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2322..3065)
DNA (744bp) protein (248aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Glutamine amidotransferase subunit PdxT n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM0_9BIFI
glutamine amidotransferase
L3_121_243G1_scaffold_514_4
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3190..4065)
DNA (876bp) protein (292aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM1_9BIFI
pyridoxal biosynthesis lyase PdxS
L3_121_243G1_scaffold_514_5
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4471..8412)
DNA (3942bp) protein (1314aa)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM3_9BIFI
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAR02419.1}; ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEB22318.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
ABC transporter ATP-binding protein
L3_121_243G1_scaffold_514_6
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8998..10821
DNA (1824bp) protein (608aa)
AMP-binding enzyme n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM5_9BIFI
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ29791.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
AMP-binding protein
L3_121_243G1_scaffold_514_7
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10950..12464)
DNA (1515bp) protein (505aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
L-arabinose isomerase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM6_9BIFI
L-arabinose isomerase
L3_121_243G1_scaffold_514_8
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12547..13239)
DNA (693bp) protein (231aa)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EEB22322.1}; EC=5.1.3.4 {ECO:0000313|EMBL:EEB22322.1};; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
araD; L-ribulose-5-phosphate 4-epimerase (EC:4.1.2.17)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM7_9BIFI
L3_121_243G1_scaffold_514_9
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13263..14900)
DNA (1638bp) protein (546aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM8_9BIFI
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EEB22323.1}; Putative carbohydrate kinase {ECO:0000313|EMBL:BAR02424.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
ATPase
L3_121_243G1_scaffold_514_10
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15121..16239)
DNA (1119bp) protein (373aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSM9_9BIFI
Transcriptional regulator {ECO:0000313|EMBL:BAR02425.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
LacI-type transcriptional regulator
L3_121_243G1_scaffold_514_11
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16317..17789)
DNA (1473bp) protein (491aa)
Maf-like protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN0_9BIFI
Maf-like protein {ECO:0000313|EMBL:EEB22325.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR02426.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
septum formation protein Maf
L3_121_243G1_scaffold_514_12
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17786..18790)
DNA (1005bp) protein (335aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Homoserine kinase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN1_9BIFI
serine kinase
L3_121_243G1_scaffold_514_13
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18989..20305)
DNA (1317bp) protein (439aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Homoserine dehydrogenase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN2_9BIFI
homoserine dehydrogenase
L3_121_243G1_scaffold_514_14
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20509..22089)
DNA (1581bp) protein (527aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120};; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Diaminopimelate decarboxylase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN3_9BIFI
diaminopimelate decarboxylase
L3_121_243G1_scaffold_514_15
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(22095..23885)
DNA (1791bp) protein (597aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Arginine--tRNA ligase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN4_9BIFI
arginyl-tRNA synthetase
L3_121_243G1_scaffold_514_16
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23917..25386)
DNA (1470bp) protein (490aa)
Amino acid permease n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN5_9BIFI
Amino acid transport protein {ECO:0000313|EMBL:BAR02431.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
amino acid transporter
L3_121_243G1_scaffold_514_17
unknown

Not on your lists

comp(25401..25562)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_121_243G1_scaffold_514_18
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25611..26000)
DNA (390bp) protein (130aa)
Putative endoribonuclease L-PSP n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN7_9BIFI
regulator
Regulator {ECO:0000313|EMBL:AIZ15129.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L3_121_243G1_scaffold_514_19
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26469..27107
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSN9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEB22334.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L3_121_243G1_scaffold_514_20
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27202..28164)
DNA (963bp) protein (321aa)
Tetratricopeptide repeat protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSP0_9BIFI
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EEB22335.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR02434.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
thioredoxin
L3_121_243G1_scaffold_514_21
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28268..29266)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSP1_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEB22336.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L3_121_243G1_scaffold_514_22
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29266..30501)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSP2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEB22337.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L3_121_243G1_scaffold_514_23
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30583..31539
DNA (957bp) protein (319aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Bifidobacterium RepID=R6NTA6_9BIFI
peptidylprolyl isomerase
L3_121_243G1_scaffold_514_24
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31600..32304)
DNA (705bp) protein (235aa)
Endonuclease NucS {ECO:0000256|HAMAP-Rule:MF_00722}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00722};; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Endonuclease NucS n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P3V5_9BIFI
hypothetical protein
L3_121_243G1_scaffold_514_25
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32487..32765)
DNA (279bp) protein (93aa)
atpC; ATP synthase F0F1 subunit epsilon (EC:3.6.3.14)
ATP synthase, delta/epsilon subunit, beta-sandwich domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSP7_9BIFI
ATP synthase, delta/epsilon subunit, beta-sandwich domain protein {ECO:0000313|EMBL:EEB22342.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L3_121_243G1_scaffold_514_26
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32765..34246)
DNA (1482bp) protein (494aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
ATP F0F1 synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=2 Tax=Bifidobacterium catenulatum RepID=B6XSP8_9BIFI
L3_121_243G1_scaffold_514_27
unknown

Not on your lists

comp(34255..34332)
DNA (78bp) protein (26aa)
F0F1 ATP synthase subunit gamma
Displaying 27 items

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