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L3_121_243G1_scaffold_761

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_761_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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110..517
DNA (408bp) protein (136aa)
Phage minor structural protein n=5 Tax=root RepID=E4P1N8_BIFBP
phage minor structural protein
Phage minor structural protein {ECO:0000313|EMBL:EKF15239.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_243G1_scaffold_761_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

748..1173
DNA (426bp) protein (142aa)
Phagic holin Spp1 family protein n=4 Tax=Bifidobacterium RepID=K2M2C2_BIFBI
phagic holin Spp1 family protein
Holin, SPP1 family {ECO:0000313|EMBL:ERI83022.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98137.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_243G1_scaffold_761_3

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1157..1990
DNA (834bp) protein (278aa)
Bacteriophage endolysin n=2 Tax=root RepID=E4P1P0_BIFBP
bacteriophage endolysin
Bacteriophage endolysin {ECO:0000313|EMBL:ADD65699.1}; TaxID=743964 species="Viruses; unclassified phages.;" source="Bifidobacterium phage Bbif-1.;"
L3_121_243G1_scaffold_761_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2049..2243)
DNA (195bp) protein (65aa)
DNA-binding helix-turn-helix protein n=3 Tax=Bifidobacterium bifidum RepID=E4V9M7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15642.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_121_243G1_scaffold_761_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2240..2383)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEQ7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83025.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_243G1_scaffold_761_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2451..2597)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DTC9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83026.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_121_243G1_scaffold_761_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3089..5395
DNA (2307bp) protein (769aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DN85_BIFBI
L3_121_243G1_scaffold_761_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5538..6386
DNA (849bp) protein (283aa)
metF; methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Methylenetetrahydrofolate reductase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1P3_BIFBP
L3_121_243G1_scaffold_761_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6503..6835)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM89_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53096.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_243G1_scaffold_761_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6917..10015
DNA (3099bp) protein (1033aa)
glnE; glutamate-ammonia-ligase adenylyltransferase glnE (EC:2.7.7.42)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
GlnE Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1P5_BIFBP
L3_121_243G1_scaffold_761_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10123..11118
DNA (996bp) protein (332aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Aspartate carbamoyltransferase n=2 Tax=Bifidobacterium bifidum RepID=U2DTD5_BIFBI
pyrB; aspartate carbamoyltransferase
L3_121_243G1_scaffold_761_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11118..11537
DNA (420bp) protein (140aa)
Aspartate carbamoyltransferase regulatory subunit 1 n=8 Tax=Bifidobacterium RepID=E3EM92_BIFBS
pyrI; aspartate carbamoyl transferase regulatory subunit
Aspartate carbamoyltransferase regulatory subunit 1 {ECO:0000313|EMBL:CDB22908.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_243G1_scaffold_761_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11646..13070
DNA (1425bp) protein (475aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Dihydroorotase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CG75_BIFBI
pyrC; dihydroorotase
L3_121_243G1_scaffold_761_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13141..14106
DNA (966bp) protein (322aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENZ4_BIFBS
pyrF1; Orotidine 5'-phosphate decarboxylase
L3_121_243G1_scaffold_761_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14225..15055
DNA (831bp) protein (277aa)
Dihydroorotate dehydrogenase electron transfer subunit n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENZ5_BIFBS
pyrK; dihydroorotate dehydrogenase electron transfer subunit
Dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:ADO53102.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_243G1_scaffold_761_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15058..16005
DNA (948bp) protein (316aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENZ6_BIFBS
pyrD1; dihydroorotate dehydrogenase, catalytic subunit
L3_121_243G1_scaffold_761_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16027..16725
DNA (699bp) protein (233aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Orotate phosphoribosyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E3ENZ7_BIFBS
pyrE; orotate phosphoribosyltransferase
L3_121_243G1_scaffold_761_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16876..17019
DNA (144bp) protein (48aa)
Transcriptional regulator, MerR family n=4 Tax=Bifidobacterium bifidum RepID=E4NWU6_BIFBP
MerR family transcriptional regulator
Putative transcriptional regulator, MerR family {ECO:0000313|EMBL:ADO53105.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_243G1_scaffold_761_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17089..18132
DNA (1044bp) protein (348aa)
Adh Alcohol dehydrogenase {ECO:0000313|EMBL:KFI43000.1}; EC=1.1.1.284 {ECO:0000313|EMBL:KFI43000.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
adh; alcohol dehydrogenase (EC:1.1.1.284)
GroES-like protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXU3_BIFBI
L3_121_243G1_scaffold_761_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18322..19536)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M2Z7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16396.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_121_243G1_scaffold_761_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19755..19985
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M5P9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16395.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_121_243G1_scaffold_761_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20178..20510
DNA (333bp) protein (111aa)
Serine/threonine protein kinase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHW3_BIFBI
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AFL04476.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_121_243G1_scaffold_761_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20812..23319
DNA (2508bp) protein (836aa)
Excinuclease ABC subunit A n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP03_BIFBS
uvrA1; excinuclease ABC subunit A
Excinuclease ABC subunit A {ECO:0000313|EMBL:ADO53110.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_243G1_scaffold_761_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23715..24677
DNA (963bp) protein (321aa)
Na+ driven multidrug efflux pump n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NWV0_BIFBP
Na+ driven multidrug efflux pump
Na+ driven multidrug efflux pump {ECO:0000313|EMBL:KFI43005.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_243G1_scaffold_761_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24830..25540
DNA (711bp) protein (237aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=2 Tax=Bifidobacterium RepID=E4V9P6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:CDB22114.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
short-chain dehydrogenase
L3_121_243G1_scaffold_761_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25543..26259
DNA (717bp) protein (239aa)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=3 Tax=Bifidobacterium bifidum RepID=E4V9P7_BIFBI
L3_121_243G1_scaffold_761_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26306..26830
DNA (525bp) protein (175aa)
Transcriptional regulator, PadR family n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9P8_BIFBI
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EFR50340.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
PadR family transcriptional regulator
L3_121_243G1_scaffold_761_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26837..27832
DNA (996bp) protein (332aa)
Putative integral membrane permease protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLI7_9BIFI
putative integral membrane permease protein
Putative integral membrane permease protein {ECO:0000313|EMBL:CDB22111.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_243G1_scaffold_761_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27858..28226)
DNA (369bp) protein (123aa)
cupin n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976775
Cupin domain family protein {ECO:0000313|EMBL:EFR50342.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_121_243G1_scaffold_761_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28331..29476)
DNA (1146bp) protein (382aa)
Hipa protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GKJ2_9BIFI
Hipa protein {ECO:0000313|EMBL:CDB22109.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
HipA domain-containing protein
Displaying items 1-30 of 62 in total

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