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L3_121_243G1_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 225 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_25_1
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2..295)
DNA (294bp) protein (98aa)
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:EEP44667.1}; EC=4.2.1.46 {ECO:0000313|EMBL:EEP44667.1};; Flags: Fragment;; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
dTDP-glucose 4,6-dehydratase (Fragment) n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F922_9ACTN
DTDP-glucose 4,6-dehydratase enzyme involved in rhamnose biosynthesis
L3_121_243G1_scaffold_25_2
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(304..1206)
DNA (903bp) protein (301aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F925_9ACTN
glucose-1-phosphate thymidylyltransferase
L3_121_243G1_scaffold_25_3
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1446..2387)
DNA (942bp) protein (314aa)
family 2 glycosyl transferase n=1 Tax=Bifidobacterium magnum RepID=UPI0003B71BBC
glycosyl transferase, family 2
Glycosyl transferase, family 2 {ECO:0000313|EMBL:AII77049.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_121_243G1_scaffold_25_4
Olsenella profusa, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2548..3771
DNA (1224bp) protein (408aa)
Polysaccharide biosynthesis protein n=1 Tax=Olsenella profusa F0195 RepID=U2T9U3_9ACTN
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ERL09784.1}; TaxID=1125712 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella profusa F0195.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_121_243G1_scaffold_25_5
Atopobium sp. oral taxon 810, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3768..4688
DNA (921bp) protein (307aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Atopobium sp. oral taxon 810 str. F0209 RepID=U1XX16_9ACTN
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:ERI04552.1}; TaxID=1321773 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 810 str. F0209.;"
epsG; family 2 glycosyltransferase
L3_121_243G1_scaffold_25_6
Atopobium sp. oral taxon 810, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4847..5908)
DNA (1062bp) protein (354aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Atopobium sp. oral taxon 810 str. F0209 RepID=U1Y0N6_9ACTN
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:ERI04551.1}; TaxID=1321773 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 810 str. F0209.;"
family 2 glycosyl transferase
L3_121_243G1_scaffold_25_7
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6408..7151)
DNA (744bp) protein (248aa)
Alpha-L-rhamnosidase N-terminal domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWL2_9CLOT
Alpha-L-rhamnosidase N-terminal domain protein {ECO:0000313|EMBL:EDO60159.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_121_243G1_scaffold_25_8
Bifidobacterium angulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7208..7540)
DNA (333bp) protein (111aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FCU9_9BIFI
Beta-galactosidase {ECO:0000313|EMBL:BAQ97096.1}; Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EEP21736.1}; TaxID=518635 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium angulatum DSM 20098 = JCM 7096.;"
L3_121_243G1_scaffold_25_9
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8119..10851)
DNA (2733bp) protein (911aa)
NlpC/P60 family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GCB7_9ACTN
NlpC/P60 family protein {ECO:0000313|EMBL:EEA90085.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_121_243G1_scaffold_25_10
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11017..14811)
DNA (3795bp) protein (1265aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECV9_9ACTN
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EBA38579.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_121_243G1_scaffold_25_11
Enterorhabdus caecimuris, Enterorhabdus, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14938..16011)
DNA (1074bp) protein (358aa)
HipA domain-containing protein n=1 Tax=Enterorhabdus caecimuris B7 RepID=R9KTA7_9ACTN
HipA domain-containing protein {ECO:0000313|EMBL:EOS49456.1}; TaxID=1235794 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Enterorhabdus.;" source="Enterorhabdus caecimuris B7.;"
HipA; hypothetical protein
L3_121_243G1_scaffold_25_12
Adlercreutzia equolifaciens, Adlercreutzia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16232..16537)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CKH0_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN76245.1}; TaxID=1384484 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia.;" source="Adlercreutzia equolifaciens DSM 19450.;"
L3_121_243G1_scaffold_25_13
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16775..17461)
DNA (687bp) protein (229aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
N-acylglucosamine-6-phosphate 2-epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHB2_9ACTN
L3_121_243G1_scaffold_25_14
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17477..18433)
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WFB7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71865.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
ROK family protein
L3_121_243G1_scaffold_25_15
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18443..19363)
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WFB6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71864.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
dihydrodipicolinate synthetase
L3_121_243G1_scaffold_25_16
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19509..20333)
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WFB5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71863.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
ABC transporter-like protein
L3_121_243G1_scaffold_25_17
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20334..22385)
DNA (2052bp) protein (684aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WFB4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71862.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
ABC transporter
L3_121_243G1_scaffold_25_18
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22389..23348)
DNA (960bp) protein (320aa)
ABC transporter, permease protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FBG0_9ACTN
ABC transporter, permease protein {ECO:0000313|EMBL:EEP43861.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
binding-protein-dependent transport system inner membrane protein
L3_121_243G1_scaffold_25_19
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23482..25092)
DNA (1611bp) protein (537aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FBF9_9ACTN
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEP43860.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
family 5 extracellular solute-binding protein
L3_121_243G1_scaffold_25_20
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(25544..27550)
DNA (2007bp) protein (669aa)
UvrABC system protein C n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GEH4_9ACTN
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
excinuclease ABC subunit C
L3_121_243G1_scaffold_25_21
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27553..28815)
DNA (1263bp) protein (421aa)
ATP-grasp protein-like protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D7R7_9ACTN
ATP-grasp protein-like protein {ECO:0000313|EMBL:CDD86246.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
Predicted ATP-grasp enzyme
L3_121_243G1_scaffold_25_22
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28854..29852)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D7C9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD86245.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
ATP-grasp protein
L3_121_243G1_scaffold_25_23
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29943..31127)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D8Y6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD86243.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
hypothetical protein
L3_121_243G1_scaffold_25_24
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(31199..33310)
DNA (2112bp) protein (704aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D6M8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD86239.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
virulence factor MVIN family protein
L3_121_243G1_scaffold_25_25
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(33313..33807)
DNA (495bp) protein (165aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI000348ACE8
ybaK/ebsC protein
L3_121_243G1_scaffold_25_26
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(33893..35167)
DNA (1275bp) protein (425aa)
NLP/P60 protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D7Q8_9ACTN
NLP/P60 protein {ECO:0000313|EMBL:CDD86236.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L3_121_243G1_scaffold_25_27
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

35469..36332
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WFP2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68639.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
UBA/THIF-type NAD/FAD binding protein
L3_121_243G1_scaffold_25_28
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

36349..37128
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WFP1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68638.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
TatD-related deoxyribonuclease
L3_121_243G1_scaffold_25_29
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(37150..37824)
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WFN7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68634.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
HAD-superfamily hydrolase
L3_121_243G1_scaffold_25_30
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(37938..39632)
DNA (1695bp) protein (565aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
glucose-6-phosphate isomerase n=1 Tax=Coriobacteriaceae RepID=UPI00034A01B0
glucose-6-phosphate isomerase
Displaying items 1-30 of 225 in total

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