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L3_121_243G1_scaffold_930

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_243G1_scaffold_930_1
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(351..1964)
DNA (1614bp) protein (538aa)
Peptide chain release factor 3 n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WLA8_9ACTN
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
bacterial peptide chain release factor 3 (bRF-3)
L3_121_243G1_scaffold_930_2
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(1995..2465)
DNA (471bp) protein (157aa)
SsrA-binding protein n=1 Tax=Collinsella sp. CAG:398 RepID=R6Z7F0_9ACTN
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
SsrA-binding protein
L3_121_243G1_scaffold_930_3
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2473..3336)
DNA (864bp) protein (288aa)
Tetratricopeptide repeat protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLR4_9ACTN
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDA35211.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_121_243G1_scaffold_930_4
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3365..5503)
DNA (2139bp) protein (713aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
Ribonuclease R n=1 Tax=Collinsella sp. CAG:289 RepID=R7D779_9ACTN
L3_121_243G1_scaffold_930_5
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5688..8195
DNA (2508bp) protein (836aa)
Peptidase, U32 family {ECO:0000313|EMBL:EBA39957.1}; EC=3.4.-.- {ECO:0000313|EMBL:EBA39957.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Peptidase, U32 family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9L2_9ACTN
peptidase U32
L3_121_243G1_scaffold_930_6
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8277..9023)
DNA (747bp) protein (249aa)
Transcriptional regulator, DeoR family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9K8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74720.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
transcription repressor of fructose operon FruR
L3_121_243G1_scaffold_930_7
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9027..10115)
DNA (1089bp) protein (363aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9S7_9ACTN
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EEP44455.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
oxidoreductase domain-containing protein
L3_121_243G1_scaffold_930_8
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(10302..10613)
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Collinsella sp. CAG:289 RepID=R7D3H5_9ACTN
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
50S ribosomal protein L24
L3_121_243G1_scaffold_930_9
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(10629..10997)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Collinsella sp. CAG:289 RepID=R7D4B9_9ACTN
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
50S ribosomal protein L14
L3_121_243G1_scaffold_930_10
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(11092..11358)
DNA (267bp) protein (89aa)
30S ribosomal protein S17 n=1 Tax=Collinsella sp. CAG:289 RepID=R7D4N7_9ACTN
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
30S ribosomal protein S17P
L3_121_243G1_scaffold_930_11
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(11375..11590)
DNA (216bp) protein (72aa)
50S ribosomal protein L29 n=2 Tax=Collinsella RepID=A4E9K2_9ACTN
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
50S ribosomal protein L29
L3_121_243G1_scaffold_930_12
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(11591..12019)
DNA (429bp) protein (143aa)
50S ribosomal protein L16 n=1 Tax=Collinsella sp. CAG:398 RepID=R6YTM0_9ACTN
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
50S ribosomal protein L16
L3_121_243G1_scaffold_930_13
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(12019..12729)
DNA (711bp) protein (237aa)
30S ribosomal protein S3 n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WKN1_9ACTN
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
30S ribosomal protein S3P
L3_121_243G1_scaffold_930_14
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(12735..13106)
DNA (372bp) protein (124aa)
50S ribosomal protein L22 n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WKN2_9ACTN
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
50S ribosomal protein L22
L3_121_243G1_scaffold_930_15
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(13122..13382)
DNA (261bp) protein (87aa)
30S ribosomal protein S19 n=1 Tax=Collinsella sp. CAG:398 RepID=R6ZEE9_9ACTN
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
30S ribosomal protein S19
L3_121_243G1_scaffold_930_16
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(13410..14240)
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Collinsella sp. CAG:398 RepID=R7A9A8_9ACTN
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
50S ribosomal protein L2
L3_121_243G1_scaffold_930_17
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(14396..14683)
DNA (288bp) protein (96aa)
50S ribosomal protein L23 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9J6_9ACTN
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
50S ribosomal protein L23
L3_121_243G1_scaffold_930_18
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(14684..15310)
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9T9_9ACTN
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
50S ribosomal protein L4
L3_121_243G1_scaffold_930_19
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(15358..15978)
DNA (621bp) protein (207aa)
50S ribosomal protein L3 n=1 Tax=Collinsella sp. CAG:289 RepID=R7D6T1_9ACTN
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
50S ribosomal protein L3
L3_121_243G1_scaffold_930_20
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16334..16942)
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WKN9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68984.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
phosphoglycerate mutase
L3_121_243G1_scaffold_930_21
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17141..18292)
DNA (1152bp) protein (384aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WKP0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68985.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
cation diffusion facilitator family transporter
L3_121_243G1_scaffold_930_22
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(18493..18801)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Collinsella sp. CAG:289 RepID=R7D4E2_9ACTN
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
30S ribosomal protein S10P
L3_121_243G1_scaffold_930_23
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18862..19539)
DNA (678bp) protein (226aa)
Elongation factor G n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9V5_9ACTN
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
translation elongation factor 2 (EF-2/EF-G)
Displaying 23 items

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