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L3_121_363G1_scaffold_24

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_363G1_scaffold_24_1
unknown

Not on your lists

191..607
DNA (417bp) protein (139aa)

This feature has no annotations

L3_121_363G1_scaffold_24_2
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(715..6630)
DNA (5916bp) protein (1972aa)
Hyalurononglucosaminidase {ECO:0000313|EMBL:EEA90799.1}; EC=3.2.1.35 {ECO:0000313|EMBL:EEA90799.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
nagH; hyalurononglucosaminidase (EC:3.2.1.35)
Hyalurononglucosaminidase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAA9_9ACTN
L3_121_363G1_scaffold_24_3
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6687..11588)
DNA (4902bp) protein (1634aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GDV6_9ACTN
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEA89526.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
glycosyl hydrolase
L3_121_363G1_scaffold_24_4
unknown

Not on your lists

12086..12286
DNA (201bp) protein (67aa)

This feature has no annotations

L3_121_363G1_scaffold_24_5
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12190..14697)
DNA (2508bp) protein (836aa)
Fructose-6-phosphate phosphoketolase (EC:4.1.2.22)
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase n=1 Tax=Collinsella sp. CAG:289 RepID=R7D1Z5_9ACTN
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase {ECO:0000313|EMBL:CDD84211.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
L3_121_363G1_scaffold_24_6
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15134..16168)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D1Q8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD84210.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
LacI family transcriptional regulator
L3_121_363G1_scaffold_24_7
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16411..18318)
DNA (1908bp) protein (636aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WIB8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71181.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
ABC transporter
L3_121_363G1_scaffold_24_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18320..20050)
DNA (1731bp) protein (577aa)
ABC transporter, ATP-binding protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EB95_9ACTN
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EBA39099.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
ABC transporter
L3_121_363G1_scaffold_24_9
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20139..20504)
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WIB6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71179.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
transcriptional regulator, MarR family
L3_121_363G1_scaffold_24_10
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20666..20977)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WIB4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71177.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
hypothetical protein
L3_121_363G1_scaffold_24_11
Atopobium parvulum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(21909..22628)
DNA (720bp) protein (240aa)
araD; L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:ACV50761.1}; EC=5.1.3.4 {ECO:0000313|EMBL:ACV50761.1};; TaxID=521095 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI; 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus).;"
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9H3_ATOPD
L3_121_363G1_scaffold_24_12
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22726..24333)
DNA (1608bp) protein (536aa)
Putative uncharacterized protein n=1 Tax=Olsenella sp. oral taxon 809 str. F0356 RepID=G5F384_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHF02423.1}; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
Carbohydrate kinase, FGGY
L3_121_363G1_scaffold_24_13
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24556..26052)
DNA (1497bp) protein (499aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00008909};; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
L-arabinose isomerase (EC:5.3.1.4)
L-arabinose isomerase n=1 Tax=Olsenella sp. oral taxon 809 str. F0356 RepID=G5F383_9ACTN
L3_121_363G1_scaffold_24_14
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26182..27150)
DNA (969bp) protein (323aa)
Inner-membrane translocator n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NAF3_CORGP
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AEB06480.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L3_121_363G1_scaffold_24_15
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27166..28668)
DNA (1503bp) protein (501aa)
Monosaccharide ABC transporter ATP-binding protein, CUT2 family n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NAF2_CORGP
monosaccharide ABC transporter ATP-binding protein, CUT2 family
Monosaccharide ABC transporter ATP-binding protein, CUT2 family {ECO:0000313|EMBL:AEB06479.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L3_121_363G1_scaffold_24_16
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28683..29630)
DNA (948bp) protein (316aa)
Inner-membrane translocator n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NA84_CORGP
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AEB06478.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L3_121_363G1_scaffold_24_17
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29757..30971)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NA83_CORGP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB06477.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L3_121_363G1_scaffold_24_18
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31433..32446
DNA (1014bp) protein (338aa)
Transcriptional regulator, LacI family n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NAF8_CORGP
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AEB06485.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L3_121_363G1_scaffold_24_19
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(32663..33634)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D238_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD84246.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
hypothetical protein
L3_121_363G1_scaffold_24_20
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(33939..35027)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAU3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44059.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
membrane protein
L3_121_363G1_scaffold_24_21
unknown

Not on your lists

35051..35677
DNA (627bp) protein (209aa)

This feature has no annotations

L3_121_363G1_scaffold_24_22
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

36223..37125
DNA (903bp) protein (301aa)
LysR substrate binding domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAU4_9ACTN
LysR substrate binding domain protein {ECO:0000313|EMBL:EEP44060.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
putative LysR family transcriptional regulator
L3_121_363G1_scaffold_24_23
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(37990..38529)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WIL3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX70938.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
rubrerythrin
L3_121_363G1_scaffold_24_24
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(38692..39669)
DNA (978bp) protein (326aa)
A/G-specific DNA-adenine glycosylase (EC:3.2.2.-)
Base excision DNA repair protein HhH-GPD family n=1 Tax=Collinsella sp. CAG:398 RepID=R6Z7P8_9ACTN
Base excision DNA repair protein HhH-GPD family {ECO:0000313|EMBL:CDD42230.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
L3_121_363G1_scaffold_24_25
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(39706..40200)
DNA (495bp) protein (165aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAF0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI71753.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
asnc family transcriptional regulator
L3_121_363G1_scaffold_24_26
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40698..41756)
DNA (1059bp) protein (353aa)
Putative alcohol dehydrogenase n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EMT3_9FIRM
Putative alcohol dehydrogenase {ECO:0000313|EMBL:CDA98076.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
alcohol dehydrogenase
L3_121_363G1_scaffold_24_27
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(42285..42503)
DNA (219bp) protein (73aa)
DNA-binding helix-turn-helix protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GEB0_9ACTN
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA89383.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Predicted transcriptional regulator
L3_121_363G1_scaffold_24_28
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(42934..43401)
DNA (468bp) protein (156aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Phosphodiesterase family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9W4_9ACTN
phosphodiesterase, MJ0936 family
L3_121_363G1_scaffold_24_29
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(43490..44206)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D221_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD84360.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
LytTR family two component transcriptional regulator
L3_121_363G1_scaffold_24_30
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(44275..45642)
DNA (1368bp) protein (456aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D1A7_9ACTN
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDD84359.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
signal transduction histidine kinase LytS
Displaying items 1-30 of 125 in total

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