ggKbase home page

L3_121_363G1_scaffold_33

Search features with annotation key words

Displaying items 1-30 of 146 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_363G1_scaffold_33_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

273..2399
DNA (2127bp) protein (709aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24568.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_121_363G1_scaffold_33_2

Not on your lists

comp(2736..2846)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1UKS8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC80849.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_121_363G1_scaffold_33_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3260..3886
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67154.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
GntR family transcriptional regulator
L3_121_363G1_scaffold_33_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3998..4915
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67153.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
binding-protein-dependent transport system inner membrane protein
L3_121_363G1_scaffold_33_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4917..5777
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67152.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ABC-type sugar transport system, permease component
L3_121_363G1_scaffold_33_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5836..7158
DNA (1323bp) protein (441aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW96_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67151.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ABC transporter substrate-binding protein
L3_121_363G1_scaffold_33_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7227..7979
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67150.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Hypothetical protein
L3_121_363G1_scaffold_33_8
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7998..8960
DNA (963bp) protein (321aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40401.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
BadF/BadG/BcrA/BcrD type ATPase
L3_121_363G1_scaffold_33_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8947..9687
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67148.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Hypothetical protein
L3_121_363G1_scaffold_33_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9702..11714
DNA (2013bp) protein (671aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40427.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_121_363G1_scaffold_33_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11775..12512
DNA (738bp) protein (246aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RW90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40399.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
beta-lactamase
L3_121_363G1_scaffold_33_12
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12555..16073
DNA (3519bp) protein (1173aa)
Pyrrolo-quinoline quinone n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LYT6_9EURY
WD40-like repeat protein
Tax=BJP_IG2157_Clostridiales_35_16
L3_121_363G1_scaffold_33_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16186..17418
DNA (1233bp) protein (411aa)
glycerate 2-kinase (EC:1.1.1.81 2.7.1.-)
MOFRL family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PID7_9FIRM
MOFRL family protein {ECO:0000313|EMBL:EFB77522.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_121_363G1_scaffold_33_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17615..18259
DNA (645bp) protein (215aa)
Peptidase E (EC:3.4.13.21)
Peptidase family S51 n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KL87_9FIRM
Peptidase family S51 {ECO:0000313|EMBL:EDK24725.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
L3_121_363G1_scaffold_33_15
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

18328..19797
DNA (1470bp) protein (490aa)
Transporter CPA2 family n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EPA0_9FIRM
Transporter CPA2 family {ECO:0000313|EMBL:CCX89861.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
transporter
L3_121_363G1_scaffold_33_16
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19785..20525
DNA (741bp) protein (247aa)
Uncharacterized membrane protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I567_9FIRM
Uncharacterized membrane protein {ECO:0000313|EMBL:CDB41624.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Uncharacterized membrane protein
L3_121_363G1_scaffold_33_17
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20554..20814)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99535.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_121_363G1_scaffold_33_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20827..22080)
DNA (1254bp) protein (418aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWJ9_9FIRM
L3_121_363G1_scaffold_33_19
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22227..22913
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7ANI4_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC58719.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
Predicted transcriptional regulator
L3_121_363G1_scaffold_33_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22930..23532
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99537.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_121_363G1_scaffold_33_21
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23542..23979
DNA (438bp) protein (146aa)
ASCH domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CIY7_9CLOT
ASCH domain protein {ECO:0000313|EMBL:ERI67281.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L3_121_363G1_scaffold_33_22
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24008..24484
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I6A9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32336.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L3_121_363G1_scaffold_33_23
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

24531..24983
DNA (453bp) protein (151aa)
Glyoxalase family protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AGV7_9FIRM
Glyoxalase family protein {ECO:0000313|EMBL:CCX40152.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Lactoylglutathione lyase and related lyases
L3_121_363G1_scaffold_33_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25066..25272
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77578.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_121_363G1_scaffold_33_25
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25492..26067)
DNA (576bp) protein (192aa)
Chromate transport protein ChrA n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6DYY9_9FIRM
Chromate transport protein ChrA
Chromate transport protein ChrA {ECO:0000313|EMBL:CBK91802.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_121_363G1_scaffold_33_26
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26064..26639)
DNA (576bp) protein (192aa)
Chromate transport protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZE89_EUBR3
chromate transport protein
Chromate transport protein {ECO:0000313|EMBL:ACR77352.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_121_363G1_scaffold_33_27
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(26879..27121)
DNA (243bp) protein (81aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AT69_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_121_363G1_scaffold_33_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27757..29055)
DNA (1299bp) protein (433aa)
Site-specific recombinase XerD n=3 Tax=Clostridiales RepID=D4JJS6_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBL07631.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_121_363G1_scaffold_33_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29139..29762)
DNA (624bp) protein (208aa)
Predicted transcriptional regulators n=3 Tax=Clostridiales RepID=D4JJS7_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL07632.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_121_363G1_scaffold_33_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30000..30233
DNA (234bp) protein (78aa)
DNA binding domain, excisionase family n=3 Tax=Clostridiales RepID=D4JJS8_9FIRM
DNA binding domain, excisionase family
DNA binding domain, excisionase family {ECO:0000313|EMBL:CBL07633.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 146 in total

View Taxonomy