ggKbase home page

L3_121_363G1_scaffold_150

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_363G1_scaffold_150_1
Paenibacillus sp. E194, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2..1525
DNA (1524bp) protein (508aa)
Putative 40 kDa cell wall protein n=29 Tax=Streptococcus mutans RepID=I6SU99_STRMG
40 kDa cell wall protein precursor
Uncharacterized protein {ECO:0000313|EMBL:KJB84787.1}; TaxID=1458845 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. E194.;"
L3_121_363G1_scaffold_150_2
unknown

Not on your lists

1545..2117
DNA (573bp) protein (191aa)

This feature has no annotations

L3_121_363G1_scaffold_150_3
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2244..4259
DNA (2016bp) protein (672aa)
Putative signaling protein consisting of a modified GGDEF domain and a DHH domain protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N1M0_9CLOT
Putative signaling protein consisting of a modified GGDEF domain and a DHH domain protein {ECO:0000313|EMBL:CDC05893.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
phosphoesterase RecJ domain-containing protein
L3_121_363G1_scaffold_150_4
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4439..4885
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Clostridium sp. CAG:389 RepID=R7LMK1_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
rplI; 50S ribosomal protein L9
L3_121_363G1_scaffold_150_5
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4985..6319
DNA (1335bp) protein (445aa)
Replicative DNA helicase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NBE4_9CLOT
Replicative DNA helicase {ECO:0000313|EMBL:CDC05609.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
replicative DNA helicase
L3_121_363G1_scaffold_150_6
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6357..7397
DNA (1041bp) protein (347aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKM1_9CLOT
ATPase
L3_121_363G1_scaffold_150_7
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7534..9351
DNA (1818bp) protein (606aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium sp. CAG:343 RepID=R6PA62_9CLOT
ATP-dependent metalloprotease FtsH
L3_121_363G1_scaffold_150_8
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9594..10202
DNA (609bp) protein (203aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Clostridium sp. CAG:343 RepID=R6N426_9CLOT
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CDC06783.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_121_363G1_scaffold_150_9
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10382..10588)
DNA (207bp) protein (69aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. CAG:389 RepID=R7LN83_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDE90050.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
transcriptional regulator, XRE family
L3_121_363G1_scaffold_150_10
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10814..10984
DNA (171bp) protein (57aa)
30S ribosomal protein S21 n=3 Tax=environmental samples RepID=R6H4N2_9CLOT
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
30S ribosomal protein S21
L3_121_363G1_scaffold_150_11
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11357..12631
DNA (1275bp) protein (425aa)
Putative Zn-dependent peptidase n=1 Tax=Clostridium sp. CAG:440 RepID=R7GB68_9CLOT
Putative Zn-dependent peptidase {ECO:0000313|EMBL:CDE24629.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
putative Zn-dependent peptidase
L3_121_363G1_scaffold_150_12
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12718..14004
DNA (1287bp) protein (429aa)
Peptidase M16 domain protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PA68_9CLOT
Peptidase M16 domain protein {ECO:0000313|EMBL:CDC06787.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
peptidase M16 domain-containing protein
L3_121_363G1_scaffold_150_13
Clostridium sp. CAG:575, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14212..14418
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:575 RepID=R6HH85_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB32706.1}; TaxID=1262823 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:575.;"
L3_121_363G1_scaffold_150_14
unknown

Not on your lists

14405..14545
DNA (141bp) protein (47aa)

This feature has no annotations

L3_121_363G1_scaffold_150_15
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14524..17961
DNA (3438bp) protein (1146aa)
SNF2-related protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FKW8_9CLOT
SNF2-related protein {ECO:0000313|EMBL:CDE14367.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
SNF2-related protein
L3_121_363G1_scaffold_150_16
unknown

Not on your lists

18024..18536
DNA (513bp) protein (171aa)

This feature has no annotations

L3_121_363G1_scaffold_150_17
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18533..19930
DNA (1398bp) protein (466aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Clostridium sp. CAG:343 RepID=R6NCR0_9CLOT
tRNA (uracil-5-)-methyltransferase Gid
L3_121_363G1_scaffold_150_18
unknown

Not on your lists

20050..20226
DNA (177bp) protein (59aa)

This feature has no annotations

L3_121_363G1_scaffold_150_19
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20280..21635
DNA (1356bp) protein (452aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium sp. CAG:343 RepID=R6N263_9CLOT
Translation initiation factor IF-2 {ECO:0000313|EMBL:CDC06078.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L3_121_363G1_scaffold_150_20
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21795..22208
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=1 Tax=Clostridium sp. CAG:470 RepID=R7FIQ9_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
SSU ribosomal protein S12P
L3_121_363G1_scaffold_150_21
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22514..22984
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Clostridium sp. CAG:356 RepID=R6Z201_9CLOT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
rpsG; 30S ribosomal protein S7
L3_121_363G1_scaffold_150_22
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23280..25361
DNA (2082bp) protein (694aa)
Elongation factor G n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6I3_9CLOT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
translation elongation factor G
L3_121_363G1_scaffold_150_23
Clostridium sp. CAG:492, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25568..26770
DNA (1203bp) protein (401aa)
Elongation factor Tu n=1 Tax=Clostridium sp. CAG:492 RepID=R5ZNI5_9CLOT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262813 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:492.;"
tuf; Elongation factor Tu
L3_121_363G1_scaffold_150_24
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26989..28047
DNA (1059bp) protein (353aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
Phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:440 RepID=R7GBX8_9CLOT
phosphate:acyl-[acyl carrier protein] acyltransferase
L3_121_363G1_scaffold_150_25
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28351..28593
DNA (243bp) protein (81aa)
Acyl carrier protein n=1 Tax=Clostridium sp. CAG:356 RepID=R6YZU7_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
acyl carrier protein
L3_121_363G1_scaffold_150_26
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28706..29488)
DNA (783bp) protein (261aa)
Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 n=1 Tax=Clostridium sp. CAG:389 RepID=R7LVA0_9CLOT
Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 {ECO:0000313|EMBL:CDE91292.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L3_121_363G1_scaffold_150_27
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29654..29776
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:389 RepID=R7LP16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE90295.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
L3_121_363G1_scaffold_150_28
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29769..30467
DNA (699bp) protein (233aa)
DnaD domain protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N3L4_9CLOT
DnaD domain protein {ECO:0000313|EMBL:CDC06568.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_121_363G1_scaffold_150_29
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30482..30730
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:356 RepID=R7A485_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD37542.1}; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
L3_121_363G1_scaffold_150_30
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30787..31029
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:356 RepID=R6Z9I2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD37541.1}; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
Displaying items 1-30 of 98 in total

View Taxonomy