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L3_121_363G1_scaffold_179

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_363G1_scaffold_179_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..872)
DNA (870bp) protein (290aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DPC3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83437.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_121_363G1_scaffold_179_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(928..1590)
DNA (663bp) protein (221aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=I3WJH2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43787.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_363G1_scaffold_179_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1779..2435
DNA (657bp) protein (219aa)
Response regulator receiver n=6 Tax=Bifidobacterium bifidum RepID=E3EQF9_BIFBS
response regulator
Response regulator receiver {ECO:0000313|EMBL:KFI43786.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_363G1_scaffold_179_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2432..3718
DNA (1287bp) protein (429aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
histidine-kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=Q0ZII4_BIFBI
L3_121_363G1_scaffold_179_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3738..4904
DNA (1167bp) protein (389aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DUG9_BIFBI
LacI transcription regulator {ECO:0000313|EMBL:ABE00942.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
LacI family transcriptional regulator
L3_121_363G1_scaffold_179_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4895..5398)
DNA (504bp) protein (168aa)
nagA; N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000313|EMBL:AFL05031.1}; EC=3.5.1.25 {ECO:0000313|EMBL:AFL05031.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
NagA2 N-acetylglucosamine-6-phosphate deacetylase n=4 Tax=Bifidobacterium bifidum RepID=E4NYP2_BIFBP
L3_121_363G1_scaffold_179_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5417..8575)
DNA (3159bp) protein (1053aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
lacZ6; beta-galactosidase (EC:3.2.1.23)
Beta galactosidase small chain n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CHB9_BIFBI
L3_121_363G1_scaffold_179_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8941..10416
DNA (1476bp) protein (492aa)
Galactoside symporter n=6 Tax=Bifidobacterium RepID=E3EQF4_BIFBS
lacS; galactoside symporter
Lactose permease {ECO:0000313|EMBL:EKF16332.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_363G1_scaffold_179_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10771..11463
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CFQ3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43780.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
transcriptional regulator
L3_121_363G1_scaffold_179_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11675..11983
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E3EQF1_BIFBS
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:EKF16343.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_363G1_scaffold_179_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12069..12980)
DNA (912bp) protein (304aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
tRNA (m(7)G46) methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DUB4_BIFBI
L3_121_363G1_scaffold_179_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13174..14187
DNA (1014bp) protein (338aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQE9_BIFBS
GalE UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDB21880.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_179_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14482..15189
DNA (708bp) protein (236aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=K2M5J7_BIFBI
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI43777.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_363G1_scaffold_179_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16558..17709
DNA (1152bp) protein (384aa)
Lactaldehyde reductase n=7 Tax=Bifidobacterium RepID=E3EQE6_BIFBS
fucO; Lactaldehyde reductase
L-1,2-propanediol oxidoreductase {ECO:0000313|EMBL:BAQ98657.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_363G1_scaffold_179_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17880..18779)
DNA (900bp) protein (300aa)
glycosyltransferase (EC:2.4.1.226)
Glycosyltransferase, family 2 n=3 Tax=Bifidobacterium bifidum RepID=E3EQE5_BIFBS
Glycosyltransferase, family 2 {ECO:0000313|EMBL:ADO53601.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_363G1_scaffold_179_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18833..20437
DNA (1605bp) protein (535aa)
Conserved hypothetical membrane spanning protein with DUF20 domain n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYN3_BIFBP
hypothetical protein
Conserved hypothetical membrane spanning protein with DUF20 domain {ECO:0000313|EMBL:CDB21884.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_179_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20437..21660
DNA (1224bp) protein (408aa)
N-acetylglucosaminyltransferase n=7 Tax=Bifidobacterium RepID=E3EQE3_BIFBS
pgaC; biofilm PGA synthesis N-glycosyl transferase
Biofilm PGA synthesis N-glycosyl transferase {ECO:0000313|EMBL:EKF16335.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_363G1_scaffold_179_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21799..22728
DNA (930bp) protein (310aa)
ABC type transport system, ATP-binding protein n=7 Tax=Bifidobacterium bifidum RepID=E3EQE2_BIFBS
ABC transporter ATP-binding protein
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ98653.1}; ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI83385.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_363G1_scaffold_179_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22728..24383
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DUC2_BIFBI
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43771.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ABC transporter permease
L3_121_363G1_scaffold_179_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24490..25905
DNA (1416bp) protein (472aa)
d-alanyl-d-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein) n=2 Tax=Bifidobacterium bifidum RepID=E4NYM9_BIFBP
D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein) {ECO:0000313|EMBL:CDB21888.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_179_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25918..27036
DNA (1119bp) protein (373aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
tRNA(Ile)-lysidine synthase n=2 Tax=Bifidobacterium bifidum RepID=E4VBY9_BIFBI
tilS; tRNA(Ile)-lysidine synthase
L3_121_363G1_scaffold_179_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27014..27580
DNA (567bp) protein (189aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EFR51105.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EFR51105.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hpt; hypoxanthine phosphoribosyl transferase (EC:2.4.2.8)
Hypoxanthine-guanine phosphoribosyltransferase n=8 Tax=Bifidobacterium RepID=E3EQD8_BIFBS
L3_121_363G1_scaffold_179_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27614..29680
DNA (2067bp) protein (689aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ATP-dependent zinc metalloprotease FtsH n=5 Tax=Bifidobacterium RepID=I3WJE9_BIFBI
ftsH; cell division protease
L3_121_363G1_scaffold_179_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29821..30387
DNA (567bp) protein (189aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
GTP cyclohydrolase 1 n=8 Tax=Bifidobacterium RepID=E3EQD6_BIFBS
L3_121_363G1_scaffold_179_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30453..31325
DNA (873bp) protein (291aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Dihydropteroate synthase n=3 Tax=Bifidobacterium RepID=E3EQD5_BIFBS
folP; dihydropteroate synthase
L3_121_363G1_scaffold_179_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31408..32922
DNA (1515bp) protein (505aa)
sulD; dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:4.1.2.25)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase {ECO:0000313|EMBL:EFR51109.1}; EC=2.7.6.3 {ECO:0000313|EMBL:EFR51109.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=4 Tax=Bifidobacterium bifidum RepID=E3EQD4_BIFBS
L3_121_363G1_scaffold_179_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32919..33458
DNA (540bp) protein (180aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4VBZ5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFR51110.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_121_363G1_scaffold_179_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33979..34923)
DNA (945bp) protein (315aa)
Acyl-CoA thioesterase n=4 Tax=Bifidobacterium RepID=K2HA86_BIFBI
Putative acyl-CoA thioesterase II {ECO:0000313|EMBL:EFR51111.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
tesB; acyl-CoA thioesterase
L3_121_363G1_scaffold_179_29
unknown

Not on your lists

comp(34944..35117)
DNA (174bp) protein (58aa)

This feature has no annotations

L3_121_363G1_scaffold_179_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35267..38605
DNA (3339bp) protein (1113aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQD1_BIFBS
Uncharacterized protein {ECO:0000313|EMBL:ADO53587.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
hypothetical protein
Displaying items 1-30 of 113 in total

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