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L3_121_363G1_scaffold_541

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_363G1_scaffold_541_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..481)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GN29_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22656.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_541_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

720..1184
DNA (465bp) protein (155aa)
LnbP lacto-N-biose phosphorylase {ECO:0000313|EMBL:KFI43092.1}; EC=2.4.1.211 {ECO:0000313|EMBL:KFI43092.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9Y9_BIFBI
lnbP2; lacto_N-biose phorylase
L3_121_363G1_scaffold_541_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1413..2354
DNA (942bp) protein (314aa)
Sugar kinase ROK family protein n=2 Tax=Bifidobacterium RepID=R6HAJ2_9BIFI
Glucokinase {ECO:0000313|EMBL:BAQ98248.1}; ROK family protein {ECO:0000313|EMBL:ERI82399.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
sugar kinase, ROK family protein
L3_121_363G1_scaffold_541_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2497..3651)
DNA (1155bp) protein (385aa)
Sugar kinase, ROK family {ECO:0000313|EMBL:KFI43090.1}; EC=2.7.1.2 {ECO:0000313|EMBL:KFI43090.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Sugar kinase, ROK family n=5 Tax=Bifidobacterium RepID=E4NX45_BIFBP
xylR; xylose repressor
L3_121_363G1_scaffold_541_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3941..5029
DNA (1089bp) protein (363aa)
Mucin desulfatase n=6 Tax=Bifidobacterium RepID=E3EQ52_BIFBS
nahK; N-acetylhexosamine-1-kinase NahK
N-acetylhexosamine-1-kinase NahK {ECO:0000313|EMBL:CDB23235.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_541_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5029..6543
DNA (1515bp) protein (505aa)
galT2; galactose-1-phosphate uridylyltransferase GalT2 (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Galactose-1-phosphate uridylyltransferase n=4 Tax=Bifidobacterium bifidum RepID=E4NX43_BIFBP
L3_121_363G1_scaffold_541_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6589..7611
DNA (1023bp) protein (341aa)
galE; UDP-glucose 4-epimerase GalE (EC:5.1.3.2)
GalE UDP-glucose 4-epimerase (Leloir pathway) n=3 Tax=Bifidobacterium RepID=E4NX42_BIFBP
GalE UDP-glucose 4-epimerase (Leloir pathway) {ECO:0000313|EMBL:CDB23233.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_541_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8022..9623)
DNA (1602bp) protein (534aa)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium RepID=E3EQ49_BIFBS
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB23232.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ydiF; ABC transporter ATP-binding protein
L3_121_363G1_scaffold_541_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9855..10604
DNA (750bp) protein (250aa)
vanYG; M15B family D-Ala-D-Ala carboxypeptidase VanYG (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=3 Tax=Bifidobacterium bifidum RepID=E4V9Y0_BIFBI
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ERI82405.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98242.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_363G1_scaffold_541_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10633..12072)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
sensory transduction protein kinase (EC:2.7.13.3)
Sensory transduction protein kinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GFP6_9BIFI
L3_121_363G1_scaffold_541_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12069..12734)
DNA (666bp) protein (222aa)
two-component response regulator (EC:2.7.13.3)
Two-component response regulator n=5 Tax=Bifidobacterium bifidum RepID=E4NX38_BIFBP
Two-component response regulator {ECO:0000313|EMBL:EKF15324.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_363G1_scaffold_541_12
unknown

Not on your lists

comp(13213..13419)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_121_363G1_scaffold_541_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13633..14274
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DLJ6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43082.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_121_363G1_scaffold_541_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14494..17511
DNA (3018bp) protein (1006aa)
UvrABC system protein A n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEG6_BIFBI
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
uvrA; excinuclease ABC subunit A
L3_121_363G1_scaffold_541_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17508..19850
DNA (2343bp) protein (781aa)
UvrABC system protein C n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NX34_BIFBP
uvrC; excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_363G1_scaffold_541_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20044..21006
DNA (963bp) protein (321aa)
aroE; shikimate 5-dehydrogenase AroE (EC:1.1.1.25)
AroE Shikimate 5-dehydrogenase n=2 Tax=Bifidobacterium RepID=E4NX33_BIFBP
AroE Shikimate 5-dehydrogenase {ECO:0000313|EMBL:CDB23224.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_541_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21006..21950
DNA (945bp) protein (315aa)
UPF0042 nucleotide-binding protein BBIF_0984 n=2 Tax=Bifidobacterium bifidum RepID=E3EQ39_BIFBS
ATP-binding protein
Nucleotide-binding protein BBIF_0984 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_363G1_scaffold_541_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22117..23088
DNA (972bp) protein (324aa)
Putative sporulation transcription regulator WhiA n=7 Tax=Bifidobacterium RepID=E3EQ38_BIFBS
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_121_363G1_scaffold_541_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23246..24451
DNA (1206bp) protein (402aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphoglycerate kinase n=3 Tax=Bifidobacterium bifidum RepID=E3EQ37_BIFBS
L3_121_363G1_scaffold_541_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24520..25314
DNA (795bp) protein (265aa)
tpiA; triose-phosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Triosephosphate isomerase n=6 Tax=Bifidobacterium bifidum RepID=E3EQ36_BIFBS
L3_121_363G1_scaffold_541_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25393..25641
DNA (249bp) protein (83aa)
Preprotein translocase, SecG subunit n=8 Tax=Bifidobacterium RepID=E3EQ35_BIFBS
secG; protein translocase subunit SecG
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:ADO53185.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_363G1_scaffold_541_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25749..26699
DNA (951bp) protein (317aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=2 Tax=Bifidobacterium bifidum RepID=E4V9W7_BIFBI
L3_121_363G1_scaffold_541_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26754..27590
DNA (837bp) protein (279aa)
putative hydrolase (EC:3.1.3.18)
Cof-like hydrolase n=5 Tax=Bifidobacterium RepID=E4V9W6_BIFBI
Putative hydrolase {ECO:0000313|EMBL:CDB21999.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_541_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27587..28948
DNA (1362bp) protein (454aa)
Na+ driven multidrug efflux pump n=2 Tax=Bifidobacterium RepID=K2I667_BIFBI
Na+ driven multidrug efflux pump {ECO:0000313|EMBL:EKE50294.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Na+ driven multidrug efflux pump
L3_121_363G1_scaffold_541_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29815..31227)
DNA (1413bp) protein (471aa)
Branched-chain amino acid transport system II carrier protein n=3 Tax=Bifidobacterium bifidum RepID=E3EQ30_BIFBS
branched-chain amino acid transport system II carrier protein
Branched-chain amino acid transport system IIcarrier protein {ECO:0000313|EMBL:AFL04547.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_121_363G1_scaffold_541_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31392..32204)
DNA (813bp) protein (271aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2H8H6_BIFBI
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:CDB22295.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_363G1_scaffold_541_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32446..33549)
DNA (1104bp) protein (368aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Transaldolase n=8 Tax=Bifidobacterium bifidum RepID=E3EQ28_BIFBS
tal; transaldolase
L3_121_363G1_scaffold_541_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33682..35790)
DNA (2109bp) protein (703aa)
Transketolase {ECO:0000313|EMBL:EFR50401.1}; EC=2.2.1.1 {ECO:0000313|EMBL:EFR50401.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Transketolase n=3 Tax=Bifidobacterium bifidum RepID=E3EQ27_BIFBS
tkt; transketolase
L3_121_363G1_scaffold_541_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36138..37394
DNA (1257bp) protein (419aa)
HrcA Heat-inducible transcription repressor n=2 Tax=Bifidobacterium bifidum RepID=E4NX20_BIFBP
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_363G1_scaffold_541_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37447..38598
DNA (1152bp) protein (384aa)
Chaperone protein DnaJ n=9 Tax=Bifidobacterium RepID=E3EQ25_BIFBS
dnaJ; molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 67 in total

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