ggKbase home page

L3_121_363G2_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 86 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_363G2_scaffold_78_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

515..1078
DNA (564bp) protein (188aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7A9Z5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88452.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_121_363G2_scaffold_78_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1144..3084
DNA (1941bp) protein (647aa)
Cadmium-exporting ATPase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X0T2_9PORP
Cadmium-exporting ATPase {ECO:0000313|EMBL:CDD15175.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cation-transporting ATPase
L3_121_363G2_scaffold_78_3
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3266..4255)
DNA (990bp) protein (330aa)
Glycosyl hydrolase, family 43 n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B611_9PORP
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EEC98129.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
glycoside hydrolase
L3_121_363G2_scaffold_78_4
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4358..6088)
DNA (1731bp) protein (577aa)
SusD family protein n=3 Tax=Parabacteroides RepID=B7B612_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10500.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
RagB/SusD domain-containing protein
L3_121_363G2_scaffold_78_5
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6111..9332)
DNA (3222bp) protein (1074aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5Z4J8_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN10499.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
membrane protein
L3_121_363G2_scaffold_78_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9381..10379)
DNA (999bp) protein (333aa)
Sigma factor regulatory protein, FecR/PupR family n=3 Tax=Parabacteroides merdae RepID=A7AA01_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN88458.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Fe2+-dicitrate sensor, membrane component
L3_121_363G2_scaffold_78_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10476..11090)
DNA (615bp) protein (205aa)
RNA polymerase sigma-70 factor n=2 Tax=Parabacteroides merdae RepID=A7AA02_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDN88459.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, Bacteroides expansion family 1
L3_121_363G2_scaffold_78_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11096..11995)
DNA (900bp) protein (300aa)
alkaline phosphatase (EC:3.1.3.1)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K5YHR9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13187.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_121_363G2_scaffold_78_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12090..12875
DNA (786bp) protein (262aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AA05_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88462.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_121_363G2_scaffold_78_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13002..15881)
DNA (2880bp) protein (960aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AA06_9PORP
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EDN88463.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
beta-glycosidase
L3_121_363G2_scaffold_78_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15865..17349)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AA07_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88464.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_121_363G2_scaffold_78_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17444..19111)
DNA (1668bp) protein (556aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XBN0_9PORP
SusD family protein {ECO:0000313|EMBL:CDD13776.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RagB/SusD domain-containing protein
L3_121_363G2_scaffold_78_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19135..22482)
DNA (3348bp) protein (1116aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y5S3_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD13777.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor plug
L3_121_363G2_scaffold_78_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22632..23582)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZC18_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13194.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
anti-sigma factor
L3_121_363G2_scaffold_78_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23615..25603)
DNA (1989bp) protein (663aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WR15_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13778.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_121_363G2_scaffold_78_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25705..26259)
DNA (555bp) protein (185aa)
RNA polymerase sigma-70 factor n=3 Tax=Parabacteroides RepID=A7AA13_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD13779.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
L3_121_363G2_scaffold_78_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26394..27989)
DNA (1596bp) protein (532aa)
putative alpha-glucosidase II (EC:3.2.1.20)
Glycosyl hydrolase, family 31 n=2 Tax=Parabacteroides merdae RepID=A7AA14_9PORP
Glycosyl hydrolase, family 31 {ECO:0000313|EMBL:EDN88471.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_121_363G2_scaffold_78_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28011..30167)
DNA (2157bp) protein (719aa)
Alpha-N-acetylglucosaminidase (NAGLU) n=2 Tax=Parabacteroides merdae RepID=A7AA15_9PORP
Alpha-N-acetylglucosaminidase (NAGLU) {ECO:0000313|EMBL:EDN88472.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative alpha-N-acetylglucosaminidase
L3_121_363G2_scaffold_78_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30164..31735)
DNA (1572bp) protein (524aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AA16_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13782.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_121_363G2_scaffold_78_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31737..32924)
DNA (1188bp) protein (396aa)
Glycosyl hydrolase family 16 n=3 Tax=Parabacteroides RepID=A7AA17_9PORP
Glycosyl hydrolase family 16 {ECO:0000313|EMBL:EDN88474.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase
L3_121_363G2_scaffold_78_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33010..34482)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BF81_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13784.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
frrH; putative outer membrane protein
L3_121_363G2_scaffold_78_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34515..37994)
DNA (3480bp) protein (1160aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides merdae RepID=A7AA19_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDN88476.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
frrG; putative outer membrane protein
L3_121_363G2_scaffold_78_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38153..39133)
DNA (981bp) protein (327aa)
Sigma factor regulatory protein, FecR/PupR family n=2 Tax=Parabacteroides merdae RepID=A7AA20_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN88477.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-FecI sigma factor FecR
L3_121_363G2_scaffold_78_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39782..40324)
DNA (543bp) protein (181aa)
RNA polymerase sigma-70 factor n=3 Tax=Parabacteroides RepID=A7AA21_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDN88478.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_121_363G2_scaffold_78_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40352..43501)
DNA (3150bp) protein (1050aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BF88_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88479.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_121_363G2_scaffold_78_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43629..44555
DNA (927bp) protein (309aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Riboflavin biosynthesis protein RibF n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BER4_9PORP
riboflavin biosynthesis protein RibF
L3_121_363G2_scaffold_78_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

44565..45620
DNA (1056bp) protein (352aa)
Peptidase dimerization domain protein n=2 Tax=Parabacteroides merdae RepID=A7AA24_9PORP
Peptidase dimerization domain protein {ECO:0000313|EMBL:EDN88481.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acetylornithine deacetylase
L3_121_363G2_scaffold_78_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

45675..46964
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6C217_9PORP
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EDN88482.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
O-antigen and teichoic acid export membrane protein
L3_121_363G2_scaffold_78_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(47021..48352)
DNA (1332bp) protein (444aa)
Peptidase M23 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5G2_9PORP
Peptidase M23 family {ECO:0000313|EMBL:CDD14374.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
M24/M37 family peptidase
L3_121_363G2_scaffold_78_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48354..49193)
DNA (840bp) protein (280aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AA27_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88484.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
Displaying items 1-30 of 86 in total

View Taxonomy