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L3_122_000G1_scaffold_1075

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_1075_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..105)
DNA (105bp) protein (35aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZTJ4_BIFLJ
hypothetical protein
Zinc ribbon domain protein {ECO:0000313|EMBL:EIJ23168.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_122_000G1_scaffold_1075_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(254..535)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MUJ1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15648.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_122_000G1_scaffold_1075_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

613..1206
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHY9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04502.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_122_000G1_scaffold_1075_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1365..2099)
DNA (735bp) protein (245aa)
putative hydrolase or phosphatase (EC:3.1.3.5)
Putative hydrolase or phosphatase {ECO:0000313|EMBL:AFL04501.1}; EC=3.1.3.5 {ECO:0000313|EMBL:AFL04501.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative hydrolase or phosphatase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHY8_BIFBI
L3_122_000G1_scaffold_1075_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2110..2457)
DNA (348bp) protein (116aa)
RNA polymerase-binding protein RbpA n=7 Tax=Bifidobacterium RepID=E3EP26_BIFBS
hypothetical protein
RNA polymerase-binding protein RbpA {ECO:0000256|HAMAP-Rule:MF_01483}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_122_000G1_scaffold_1075_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2581..5139)
DNA (2559bp) protein (853aa)
Helicase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H7R8_BIFBI
Helicase {ECO:0000313|EMBL:EKE50061.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
helY; helicase
L3_122_000G1_scaffold_1075_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5248..5574)
DNA (327bp) protein (109aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=I3WHY5_BIFBI
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:ADO53131.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_122_000G1_scaffold_1075_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5579..7516)
DNA (1938bp) protein (646aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2I5N0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50059.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_122_000G1_scaffold_1075_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7654..9120)
DNA (1467bp) protein (489aa)
ugpA; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
Putative UTP--glucose-1-phosphateuridylyl transferase {ECO:0000313|EMBL:AFL04496.1}; EC=2.7.7.9 {ECO:0000313|EMBL:AFL04496.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
UgpA UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NWX4_BIFBP
L3_122_000G1_scaffold_1075_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9874..10110
DNA (237bp) protein (79aa)
aldo/keto reductase n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976780
Aldo/keto diketogulonate reductase
Threonine--tRNA ligase {ECO:0000313|EMBL:CDB22099.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_122_000G1_scaffold_1075_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10298..11059)
DNA (762bp) protein (254aa)
Carboxymuconolactone decarboxylase family protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9Q9_BIFBI
Carboxymuconolactone decarboxylase family protein {ECO:0000313|EMBL:EFR50351.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
carboxymuconolactone decarboxylase
L3_122_000G1_scaffold_1075_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11362..13158
DNA (1797bp) protein (599aa)
Sugar kinase n=4 Tax=Bifidobacterium bifidum RepID=E4NWW3_BIFBP
sugar kinase
Putative YjeF domain protein {ECO:0000313|EMBL:EFR50350.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_122_000G1_scaffold_1075_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13319..13948
DNA (630bp) protein (210aa)
HAD hydrolase, family IA, variant 3 n=4 Tax=Bifidobacterium RepID=E4V9Q7_BIFBI
putative alpha beta hydrolase
Putative alpha beta hydrolase {ECO:0000313|EMBL:CDB22102.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_122_000G1_scaffold_1075_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14156..15088
DNA (933bp) protein (311aa)
Transcriptional regulator, LysR family n=8 Tax=Bifidobacterium RepID=E3EP16_BIFBS
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KFI43017.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_122_000G1_scaffold_1075_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15142..15642)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9Q5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50347.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_122_000G1_scaffold_1075_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15779..16345)
DNA (567bp) protein (189aa)
TetR family transcriptional regulator n=5 Tax=Bifidobacterium RepID=E3EP14_BIFBS
ybjK; putative HTH-type transcriptional regulator
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EKE50678.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_122_000G1_scaffold_1075_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16455..16661)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976779
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53120.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_122_000G1_scaffold_1075_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16658..16936)
DNA (279bp) protein (93aa)
Trans-aconitate methyltransferase (EC:2.1.1.144)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9Q3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50345.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_122_000G1_scaffold_1075_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16958..17257
DNA (300bp) protein (100aa)
Transcriptional regulator n=4 Tax=Bifidobacterium RepID=I3WHX3_BIFBI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFR50344.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
transcriptional regulator
L3_122_000G1_scaffold_1075_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17254..18399
DNA (1146bp) protein (382aa)
HipA domain protein n=5 Tax=Bifidobacterium bifidum RepID=E3EP10_BIFBS
HipA domain-containing protein
HipA domain protein {ECO:0000313|EMBL:ERI82950.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98163.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_122_000G1_scaffold_1075_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18504..18872
DNA (369bp) protein (123aa)
Cupin domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXK2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43010.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_122_000G1_scaffold_1075_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18898..19875)
DNA (978bp) protein (326aa)
Transporter, auxin efflux carrier family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFY9_BIFBI
putative integral membrane permease protein
Putative integral membrane permease protein {ECO:0000313|EMBL:CDB22111.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_122_000G1_scaffold_1075_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19900..20424)
DNA (525bp) protein (175aa)
Transcriptional regulator, PadR family n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9P8_BIFBI
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EFR50340.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
PadR family transcriptional regulator
L3_122_000G1_scaffold_1075_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20471..21187)
DNA (717bp) protein (239aa)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=3 Tax=Bifidobacterium bifidum RepID=E4V9P7_BIFBI
L3_122_000G1_scaffold_1075_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21190..21900)
DNA (711bp) protein (237aa)
fabG; 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MSY0_BIFBI
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EKF15203.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_122_000G1_scaffold_1075_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22056..23414)
DNA (1359bp) protein (453aa)
Na+ driven multidrug efflux pump n=2 Tax=Bifidobacterium RepID=R6GCN9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98157.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Na+ driven multidrug efflux pump
L3_122_000G1_scaffold_1075_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23488..25995)
DNA (2508bp) protein (836aa)
UvrA Excinuclease ABC subunit A n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLJ0_9BIFI
UvrA Excinuclease ABC subunit A {ECO:0000313|EMBL:CDB22116.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
uvrA1; excinuclease ABC subunit A
L3_122_000G1_scaffold_1075_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26277..26588)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V9P3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82942.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
serine/threonine protein kinase
L3_122_000G1_scaffold_1075_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27266..28342
DNA (1077bp) protein (359aa)
permease n=1 Tax=Bifidobacterium bifidum RepID=UPI00035D3547
Uncharacterized protein {ECO:0000313|EMBL:BAQ98153.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_122_000G1_scaffold_1075_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28532..29431)
DNA (900bp) protein (300aa)
adh; alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HTF5_BIFBI
Alcohol dehydrogenase {ECO:0000313|EMBL:EKE50693.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Displaying items 1-30 of 106 in total

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