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L3_122_000G1_scaffold_1351

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_1351_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(89..391)
DNA (303bp) protein (101aa)
Predicted transcriptional regulators n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K6M9_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL00492.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_122_000G1_scaffold_1351_2
Scardovia wiggsiae, Scardovia, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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699..1589
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Scardovia wiggsiae F0424 RepID=J0DEF9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EJD64668.1}; TaxID=857290 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Scardovia.;" source="Scardovia wiggsiae F0424.;"
Transcriptional regulator
L3_122_000G1_scaffold_1351_3
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1698..2735
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9ITG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS25194.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Esterase/lipase
L3_122_000G1_scaffold_1351_4
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2695..3597
DNA (903bp) protein (301aa)
Oxidoreductase aldo/keto reductase family protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JT99_9FIRM
Oxidoreductase aldo/keto reductase family protein {ECO:0000313|EMBL:CDE66072.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
Aldo/keto reductases, related to diketogulonate reductase
L3_122_000G1_scaffold_1351_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3744..4193
DNA (450bp) protein (150aa)
Flavin reductase n=2 Tax=Ruminococcus lactaris RepID=B5CNB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23697.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_122_000G1_scaffold_1351_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4199..5572
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31412.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Esterase/lipase
L3_122_000G1_scaffold_1351_7
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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5732..6742
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9ITQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS25191.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
L3_122_000G1_scaffold_1351_8
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

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6808..8010
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M8N4_9FIRM
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR03685.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
L3_122_000G1_scaffold_1351_9
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8037..8723
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CCB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE12860.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_122_000G1_scaffold_1351_10
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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8771..9427
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N8J5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79423.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_122_000G1_scaffold_1351_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9443..10078
DNA (636bp) protein (212aa)
NADPH-dependent FMN reductase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBC9_9CLOT
NADPH-dependent FMN reductase {ECO:0000313|EMBL:CDD75391.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
NADPH-dependent FMN reductase
L3_122_000G1_scaffold_1351_12
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10094..11257
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CCB2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE12858.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
alpha/beta hydrolase
L3_122_000G1_scaffold_1351_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11261..12118
DNA (858bp) protein (286aa)
Site-specific recombinase phage integrase family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSK3_9CLOT
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CDD44056.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_122_000G1_scaffold_1351_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12403..14400
DNA (1998bp) protein (666aa)
UvrABC system protein B n=1 Tax=Clostridium sp. CAG:7 RepID=R5ITW2_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
excinuclease ABC, B subunit
L3_122_000G1_scaffold_1351_15
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14545..15726
DNA (1182bp) protein (394aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HKI9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97734.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Putative cell wall binding repeat.
L3_122_000G1_scaffold_1351_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15880..16791)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ITZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43804.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_122_000G1_scaffold_1351_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17349..18377
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J4G9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43812.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Bacterial SH3 domain.
L3_122_000G1_scaffold_1351_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18436..19461
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridium sp. CAG:7 RepID=R5INR1_9CLOT
L3_122_000G1_scaffold_1351_19
unknown

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19615..20088
DNA (474bp) protein (158aa)

This feature has no annotations

L3_122_000G1_scaffold_1351_20
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20157..21884)
DNA (1728bp) protein (576aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NBA3_9FIRM
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CDF09397.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_122_000G1_scaffold_1351_21
unknown

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comp(21917..22486)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4N1I9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL38734.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_122_000G1_scaffold_1351_22
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(22512..22889)
DNA (378bp) protein (126aa)
SOS response transcriptional repressor, RecA-mediated autopeptidase n=1 Tax=Brevibacillus sp. CF112 RepID=J2HSS1_9BACL
SOS response transcriptional repressor, RecA-mediated autopeptidase {ECO:0000313|EMBL:EJL38973.1}; TaxID=1144311 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. CF112.;"
helix-turn-helix domain-containing protein
L3_122_000G1_scaffold_1351_23
unknown

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23106..23318
DNA (213bp) protein (71aa)
Helix-turn-helix n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4N1J0_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL38735.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_122_000G1_scaffold_1351_24
unknown

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23347..23838
DNA (492bp) protein (164aa)
Helix-turn-helix n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4N1J1_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL38736.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_122_000G1_scaffold_1351_25
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23848..24027
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NBA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF09402.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
L3_122_000G1_scaffold_1351_26
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23993..24595
DNA (603bp) protein (201aa)
Sporulation specific N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JZD4_9CLOT
Sporulation specific N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDE69284.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
spore-cortex-lytic enzyme, putative
L3_122_000G1_scaffold_1351_27
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24822..25073
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZCC9_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75875.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_122_000G1_scaffold_1351_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25055..26101
DNA (1047bp) protein (349aa)
RecT family protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZCC7_EUBR3
RecT family protein
RecT family protein {ECO:0000313|EMBL:ACR75873.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_122_000G1_scaffold_1351_29
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26115..26915
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZCC6_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75872.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_122_000G1_scaffold_1351_30
unknown

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26950..27759
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4N1J4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL38739.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Displaying items 1-30 of 92 in total

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