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L3_122_000G1_scaffold_9

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Displaying items 1-30 of 342 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_9_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(580..846)
DNA (267bp) protein (89aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LGG7_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDB86578.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
RNA polymerase sigma factor, sigma-70 family
L3_122_000G1_scaffold_9_2
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(827..1672)
DNA (846bp) protein (282aa)
Predicted transcriptional regulators n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6ML78_9FIRM
Predicted transcriptional regulators {ECO:0000313|EMBL:CDB86577.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Predicted transcriptional regulators
L3_122_000G1_scaffold_9_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2110..2724
DNA (615bp) protein (205aa)
CHC2 zinc finger domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YL29_9FIRM
CHC2 zinc finger domain protein {ECO:0000313|EMBL:EHM55003.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
DNA primase (bacterial type)
L3_122_000G1_scaffold_9_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2699..3223
DNA (525bp) protein (175aa)
Phage/plasmid primase, P4 family domain-containing protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C8T1_9FIRM
Phage/plasmid primase, P4 family domain-containing protein {ECO:0000313|EMBL:EHO35108.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
phage/plasmid primase, P4 family, C-terminal domain
L3_122_000G1_scaffold_9_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3213..4193
DNA (981bp) protein (327aa)
Phage/plasmid primase, P4 family domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M558_9FIRM
Phage/plasmid primase, P4 family domain protein {ECO:0000313|EMBL:ERJ94458.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
phage/plasmid primase, P4 family, C-terminal domain
L3_122_000G1_scaffold_9_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4490..5779
DNA (1290bp) protein (430aa)
Plasmid recombination enzyme n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHN8_9FIRM
Plasmid recombination enzyme.
Plasmid recombination enzyme {ECO:0000313|EMBL:CBL33271.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_122_000G1_scaffold_9_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5794..5958
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C8A6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23648.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_122_000G1_scaffold_9_8
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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6075..7076
DNA (1002bp) protein (334aa)
Virulence protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RB42_9FIRM
Virulence protein {ECO:0000313|EMBL:CCZ35989.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Virulence protein
L3_122_000G1_scaffold_9_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7183..8808
DNA (1626bp) protein (542aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HI78_9FIRM
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CDB25702.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_122_000G1_scaffold_9_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9318..9926
DNA (609bp) protein (203aa)
Methyltransferase domain protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGL4_CLOSV
Methyltransferase domain protein {ECO:0000313|EMBL:EDS06223.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_122_000G1_scaffold_9_11
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9989..10549
DNA (561bp) protein (187aa)
Transcriptional regulator TetR family n=1 Tax=Clostridium sp. CAG:81 RepID=R5FZY5_9CLOT
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCY10620.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Transcriptional regulator
L3_122_000G1_scaffold_9_12
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10590..10880)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L9G1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET62900.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L3_122_000G1_scaffold_9_13
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11279..12187
DNA (909bp) protein (303aa)
DeoR family transcriptional regulator n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E04FC4
HTH domain protein {ECO:0000313|EMBL:EEG94194.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
helix-turn-helix type 11 domain-containing protein
L3_122_000G1_scaffold_9_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12364..12828
DNA (465bp) protein (155aa)
DJ-1/PfpI family protein n=2 Tax=Clostridium butyricum RepID=B1QVE8_CLOBU
4-methyl-5(-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme {ECO:0000313|EMBL:EEP54875.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
transcriptional regulator
L3_122_000G1_scaffold_9_15
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12803..13126
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JEE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS32341.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
regulator of competence-specific genes
L3_122_000G1_scaffold_9_16
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13214..14851)
DNA (1638bp) protein (546aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Hydroxylamine reductase n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HH11_9CLOT
hypothetical protein
L3_122_000G1_scaffold_9_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14997..15902)
DNA (906bp) protein (302aa)
Transcription regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNU0_9FIRM
Transcription regulator {ECO:0000313|EMBL:CCZ79730.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
LysR family transcriptional regulator
L3_122_000G1_scaffold_9_18
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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16072..16542
DNA (471bp) protein (157aa)
Cupin domain protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAD2_FUSMR
Cupin domain protein {ECO:0000313|EMBL:EEO34819.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;"
hypothetical protein
L3_122_000G1_scaffold_9_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16583..17275)
DNA (693bp) protein (231aa)
HAD superfamily (subfamily IA) hydrolase, TIGR02254 (EC:3.8.1.2)
TIGR02254 family HAD hydrolase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JER3_9FIRM
TIGR02254 family HAD hydrolase {ECO:0000313|EMBL:EES76684.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_122_000G1_scaffold_9_20
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17502..18848
DNA (1347bp) protein (449aa)
Uncharacterized protein n=5 Tax=Clostridium RepID=A8RI85_9CLOT
Hemolysin {ECO:0000313|EMBL:ENZ34028.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_122_000G1_scaffold_9_21
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19018..20325
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6ST97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49832.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
citrate transporter, CitMHS family
L3_122_000G1_scaffold_9_22
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20568..21716
DNA (1149bp) protein (383aa)
Glutaconyl-CoA decarboxylase subunit beta {ECO:0000313|EMBL:KJJ69062.1}; EC=4.1.1.70 {ECO:0000313|EMBL:KJJ69062.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HKQ8_9CLOT
L3_122_000G1_scaffold_9_23
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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21730..21858
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EI76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ56310.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L3_122_000G1_scaffold_9_24
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21967..23064)
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=1 Tax=Clostridium sp. CAG:7 RepID=R5IYT6_9CLOT
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
GTP-binding protein YchF
L3_122_000G1_scaffold_9_25
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23888..24625
DNA (738bp) protein (246aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RMR9_9CLOT
FeS assembly ATPase SufC {ECO:0000313|EMBL:ENZ37837.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L3_122_000G1_scaffold_9_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24640..25557
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IEX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY40625.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L3_122_000G1_scaffold_9_27
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25599..26579)
DNA (981bp) protein (327aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Blautia sp. CAG:37 RepID=R7JQA3_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDE65758.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
AraC family transcriptional regulator
L3_122_000G1_scaffold_9_28
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26747..28153
DNA (1407bp) protein (469aa)
rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KAZ7_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:EGN40203.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L3_122_000G1_scaffold_9_29
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28181..29440
DNA (1260bp) protein (420aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HQ81_9FIRM
L3_122_000G1_scaffold_9_30
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

29454..30278
DNA (825bp) protein (275aa)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
Rhamnulose-1-phosphate aldolase n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BCV0_9FIRM
Rhamnulose-1-phosphate aldolase
Displaying items 1-30 of 342 in total

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