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L3_122_000G1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_56_1
Melampsora larici-populina, Melampsora, Pucciniales, Pucciniomycetes, Basidiomycota, Fungi

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1..102
DNA (102bp) protein (34aa)
Putative uncharacterized protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) RepID=F4RC50_MELLP
Putative uncharacterized protein {ECO:0000313|EMBL:EGG10217.1}; TaxID=747676 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Melampsoraceae; Melampsora.;" source="Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) (Poplar; leaf rust fungus).;"
L3_122_000G1_scaffold_56_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(308..1885)
DNA (1578bp) protein (526aa)
Putative cell surface protein n=1 Tax=Clostridium difficile CD002 RepID=U3W3L2_CLODI
Cell wall protein V domain protein {ECO:0000313|EMBL:EHJ32682.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
cell surface protein
L3_122_000G1_scaffold_56_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2182..4593)
DNA (2412bp) protein (804aa)
Cell wall binding repeat 2 family protein n=5 Tax=Clostridium difficile RepID=T4M8I3_CLODI
cwp84; cell surface-associated cysteine protease
Cell surface protein (Putative cell surface-associated cysteine protease) {ECO:0000313|EMBL:CBE06187.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_122_000G1_scaffold_56_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4821..5222
DNA (402bp) protein (134aa)
GtrA-like family protein n=7 Tax=Clostridium difficile RepID=T3F9E6_CLODI
Putative cell wall teichoic acid glycosylation protein GtcA {ECO:0000313|EMBL:EHJ32680.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative membrane protein, GtrA family
L3_122_000G1_scaffold_56_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5269..7101)
DNA (1833bp) protein (611aa)
Cwp66 n=3 Tax=Clostridium difficile RepID=Q9FA27_CLODI
Cwp66 {ECO:0000313|EMBL:AAG13990.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
cwp66; cell surface protein
L3_122_000G1_scaffold_56_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7134..7841)
DNA (708bp) protein (236aa)
GlcNAc-PI de-N-acetylase family protein n=41 Tax=Clostridium difficile RepID=T3GE12_CLODC
putative LmbE-like deacetylase
Putative LmbE-like deacetylase {ECO:0000313|EMBL:CEJ99418.1}; Uncharacterized proteins%2C LmbE homologs {ECO:0000313|EMBL:CKH87255.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_122_000G1_scaffold_56_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7948..9819)
DNA (1872bp) protein (624aa)
Cell wall binding protein n=3 Tax=Clostridium difficile RepID=Q183M5_CLOD6
cwp2; Cell wall binding protein cwp2
Cell wall binding protein cwp2 {ECO:0000313|EMBL:CAJ69679.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_122_000G1_scaffold_56_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10234..12579)
DNA (2346bp) protein (782aa)
Protein translocase subunit SecA n=1 Tax=Clostridium difficile DA00211 RepID=T3UJ83_CLODI
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
secA2; Protein translocase subunit secA 2
L3_122_000G1_scaffold_56_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12828..15008)
DNA (2181bp) protein (727aa)
Cell wall binding repeat 2 family protein n=4 Tax=Clostridium difficile RepID=T3UDD5_CLODI
SlpA {ECO:0000313|EMBL:AAF89093.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
slpA; Precursor of the S-layer proteins
L3_122_000G1_scaffold_56_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15219..16805)
DNA (1587bp) protein (529aa)
Cell wall binding protein cwp12 {ECO:0000313|EMBL:CEJ99422.1}; Surface protein {ECO:0000313|EMBL:CKH87412.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKH87412.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Bacterial Ig-like domain family protein n=1 Tax=Clostridium difficile DA00211 RepID=T3UEU8_CLODI
cwp12; Cell wall binding protein cwp12
L3_122_000G1_scaffold_56_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17024..18676)
DNA (1653bp) protein (551aa)
Cell surface protein {ECO:0000313|EMBL:CKH87441.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKH87441.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cell wall binding protein n=3 Tax=Clostridium difficile RepID=U3WH97_CLODI
cwp11; Cell wall binding protein cwp11
L3_122_000G1_scaffold_56_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18992..20872)
DNA (1881bp) protein (627aa)
Cell wall binding repeat 2 family protein n=7 Tax=Clostridium difficile RepID=T3F9W9_CLODI
Putative cell wall binding repeat 2 {ECO:0000313|EMBL:EHJ32672.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
cwp10; Cell surface protein cwp10
L3_122_000G1_scaffold_56_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21083..27004)
DNA (5922bp) protein (1974aa)
Fibronectin type III domain protein n=7 Tax=Clostridium difficile RepID=G6B4M4_CLODI
Fibronectin type III domain protein {ECO:0000313|EMBL:EHJ32671.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative calcium-binding adhesion protein
L3_122_000G1_scaffold_56_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27385..28818)
DNA (1434bp) protein (478aa)
SCP-like protein n=145 Tax=Clostridium difficile RepID=G6B4M5_CLODI
SCP-like protein {ECO:0000313|EMBL:EHJ33217.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
cell surface protein
L3_122_000G1_scaffold_56_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29241..31136)
DNA (1896bp) protein (632aa)
Cell wall binding protein n=1 Tax=Clostridium difficile CD002 RepID=U3W171_CLODI
Cell wall binding protein {ECO:0000313|EMBL:CCL23170.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
cwp8; Cell wall binding protein cwp8
L3_122_000G1_scaffold_56_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31761..31904)
DNA (144bp) protein (48aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=T3G9T2_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62882.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_122_000G1_scaffold_56_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31970..32332)
DNA (363bp) protein (121aa)
Uncharacterized protein n=115 Tax=Clostridium difficile RepID=T3G8N3_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31097.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_122_000G1_scaffold_56_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32390..32683)
DNA (294bp) protein (98aa)
Preprotein translocase, YajC subunit n=214 Tax=Clostridium difficile RepID=C9XPA6_CLODC
putative protein translocase subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EHJ33222.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_122_000G1_scaffold_56_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32817..33938)
DNA (1122bp) protein (374aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
tgt; Queuine tRNA-ribosyltransferase (tRNA-guaninetransglycosylase) (Guanine insertion enzyme) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium difficile CD002 RepID=U3W175_CLODI
L3_122_000G1_scaffold_56_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34017..34502)
DNA (486bp) protein (162aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=G6B4N2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31100.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_122_000G1_scaffold_56_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34514..35539)
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=6 Tax=Clostridium difficile RepID=G6B4N3_CLODI
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
L3_122_000G1_scaffold_56_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35857..36876)
DNA (1020bp) protein (340aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Holliday junction ATP-dependent DNA helicase RuvB n=203 Tax=Clostridium difficile RepID=RUVB_CLOD6
L3_122_000G1_scaffold_56_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36967..37569)
DNA (603bp) protein (201aa)
ruvA; Holliday junction ATP-dependent DNA helicaseRuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Clostridium difficile CD22 RepID=T2VBU1_CLODI
L3_122_000G1_scaffold_56_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37562..38071)
DNA (510bp) protein (170aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Crossover junction endodeoxyribonuclease RuvC n=128 Tax=Clostridium difficile RepID=C9XPB2_CLODC
ruvC; Holliday junction resolvase
L3_122_000G1_scaffold_56_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38384..39013)
DNA (630bp) protein (210aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=T3GD12_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH87907.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88534.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_122_000G1_scaffold_56_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39216..39539
DNA (324bp) protein (108aa)
Uncharacterized protein n=126 Tax=Clostridium difficile RepID=C9XPB4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK99303.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_122_000G1_scaffold_56_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39807..40661
DNA (855bp) protein (285aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=T2VAH7_CLODI
hypothetical protein
Predicted membrane protein {ECO:0000313|EMBL:CKH87960.1}; Putative membrane protein {ECO:0000313|EMBL:CDS89157.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_122_000G1_scaffold_56_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40848..42284)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B4P1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32654.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_122_000G1_scaffold_56_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42355..43737)
DNA (1383bp) protein (461aa)
H+ symporter family protein n=130 Tax=Clostridium difficile RepID=T3GBC4_CLODC
Gluconate permease {ECO:0000313|EMBL:CKH88013.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
gluconate permease
L3_122_000G1_scaffold_56_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43873..44763)
DNA (891bp) protein (297aa)
2-hydroxy-3-oxopropionate reductase n=84 Tax=Clostridium difficile RepID=C9XPB8_CLODC
garR; tartronate semialdehyde reductase
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:EHJ32652.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Displaying items 1-30 of 131 in total

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