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L3_122_000G1_scaffold_291

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_291_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..325)
DNA (324bp) protein (108aa)
Hemagglutinin family protein (Fragment) n=1 Tax=Clostridium difficile CD127 RepID=T4YP55_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH15337.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
cbpA; putative serine-aspartate repeat-containingprotein SdrF
L3_122_000G1_scaffold_291_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

622..1194
DNA (573bp) protein (191aa)
Sortase B (Modular protein) n=1 Tax=Clostridium difficile CD002 RepID=U3W3C8_CLODI
Sortase, SrtB family {ECO:0000313|EMBL:EHJ32190.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative peptidase C60B, sortase B
L3_122_000G1_scaffold_291_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2206..2868)
DNA (663bp) protein (221aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
Uncharacterized ABC transporter ATP-binding protein TM_0352 n=1 Tax=Clostridium difficile CD002 RepID=U3W5V2_CLODI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ28983.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_122_000G1_scaffold_291_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2885..5440)
DNA (2556bp) protein (852aa)
Efflux ABC transporter, permease protein n=8 Tax=Clostridium difficile RepID=G6B5Q5_CLODI
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EHJ28984.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_122_000G1_scaffold_291_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5515..5868)
DNA (354bp) protein (118aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B5Q6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32193.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
conserved hypothetical protein
L3_122_000G1_scaffold_291_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5880..6437)
DNA (558bp) protein (186aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=G6B5Q7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32194.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
lipoprotein
L3_122_000G1_scaffold_291_7
Peptoniphilus lacrimalis, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7396..7650)
DNA (255bp) protein (85aa)
ABC transporter, ATP-binding protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRJ4_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFA90833.1}; TaxID=596330 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus lacrimalis 315-B.;"
ABC transporter ATP-binding protein
L3_122_000G1_scaffold_291_8
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7991..8311)
DNA (321bp) protein (107aa)
Helicase C-terminal domain protein n=3 Tax=Clostridium difficile RepID=T2W9S9_CLODI
DEAD/DEAH box helicase {ECO:0000313|EMBL:EID18685.1}; TaxID=1095729 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus subsp. whileyi CCUG 39159.;"
DEAD/DEAH box helicase
L3_122_000G1_scaffold_291_9
Ureaplasma urealyticum, Ureaplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(8419..8655)
DNA (237bp) protein (79aa)
Helicase C-terminal domain protein n=3 Tax=Clostridium difficile RepID=T2W9S9_CLODI
Dead/deah box helicase domain protein {ECO:0000313|EMBL:EDT49428.1}; TaxID=515611 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Ureaplasma.;" source="Ureaplasma urealyticum serovar 13 str. ATCC 33698.;"
dead/deah box helicase domain-containing protein
L3_122_000G1_scaffold_291_10
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8783..8944)
DNA (162bp) protein (54aa)
DEAD/DEAH box helicase family protein n=7 Tax=Clostridium difficile RepID=T2YX53_CLODI
dead/deah box helicase domain-containing protein
DEAD/DEAH box helicase {ECO:0000313|EMBL:EID18685.1}; TaxID=1095729 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus subsp. whileyi CCUG 39159.;"
L3_122_000G1_scaffold_291_11
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8966..9211)
DNA (246bp) protein (82aa)
Uncharacterized protein n=23 Tax=Clostridium difficile RepID=T2WBF9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EID18687.1}; TaxID=1095729 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus subsp. whileyi CCUG 39159.;"
hypothetical protein
L3_122_000G1_scaffold_291_12
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(9307..9558)
DNA (252bp) protein (84aa)
Serine/threonine protein kinase n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C002_9FIRM
Serine/threonine protein kinase {ECO:0000313|EMBL:CDD71411.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_122_000G1_scaffold_291_13
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9726..11918)
DNA (2193bp) protein (731aa)
DEAD/DEAH box helicase family protein n=24 Tax=Clostridium difficile RepID=T2WAG1_CLODI
Type I restriction enzyme R protein {ECO:0000313|EMBL:EID18707.1}; TaxID=1095729 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus subsp. whileyi CCUG 39159.;"
hypothetical protein
L3_122_000G1_scaffold_291_14
Streptobacillus moniliformis, Streptobacillus, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(11915..12634)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) RepID=D1AXV7_STRM9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ01133.1}; TaxID=519441 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Streptobacillus.;" source="Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC; 10651 / 9901).;"
L3_122_000G1_scaffold_291_15
Fusobacterium nucleatum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(12624..13613)
DNA (990bp) protein (330aa)
TYPE I RESTRICTION-MODIFICATION SYSTEM SPECIFICITY SUBUNIT n=1 Tax=Fusobacterium nucleatum subsp. vincentii ATCC 49256 RepID=Q7P352_FUSNV
TYPE I RESTRICTION-MODIFICATION SYSTEM SPECIFICITY SUBUNIT {ECO:0000313|EMBL:EAA24968.1}; TaxID=209882 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium nucleatum subsp. vincentii ATCC 49256.;"
hypothetical protein
L3_122_000G1_scaffold_291_16
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13848..13955)
DNA (108bp) protein (36aa)
Type I restriction modification DNA specificity domain protein n=25 Tax=Clostridium difficile RepID=T2W8Y6_CLODI
type I restriction-modification system specificity subunit S
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EID18698.1}; TaxID=1095729 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus subsp. whileyi CCUG 39159.;"
L3_122_000G1_scaffold_291_17
Campylobacter showae, Campylobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13948..15402)
DNA (1455bp) protein (485aa)
N-6 DNA methylase n=1 Tax=Campylobacter showae CC57C RepID=M3II45_9PROT
N-6 DNA methylase {ECO:0000313|EMBL:EMG29766.1}; TaxID=1073353 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.;" source="Campylobacter showae CC57C.;"
N-6 DNA methylase
L3_122_000G1_scaffold_291_18
Ureaplasma urealyticum, Ureaplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(15342..15794)
DNA (453bp) protein (151aa)
restriction endonuclease subunit M n=1 Tax=Clostridium difficile RepID=UPI00017F4F48
Type I restriction-modification system specificity subunit {ECO:0000313|EMBL:EDT49342.1}; TaxID=515611 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Ureaplasma.;" source="Ureaplasma urealyticum serovar 13 str. ATCC 33698.;"
N-6 DNA methylase
L3_122_000G1_scaffold_291_19
Streptobacillus moniliformis, Streptobacillus, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(15733..16005)
DNA (273bp) protein (91aa)
N-6 DNA methylase n=1 Tax=Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) RepID=D1AXV5_STRM9
N-6 DNA methylase
N-6 DNA methylase {ECO:0000313|EMBL:ACZ01131.1}; TaxID=519441 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Streptobacillus.;" source="Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC; 10651 / 9901).;"
L3_122_000G1_scaffold_291_20
Peptostreptococcus sp. MV1, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16006..16224)
DNA (219bp) protein (73aa)
DNA-binding helix-turn-helix protein n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MGK9_9FIRM
XRE family transcriptional regulator {ECO:0000313|EMBL:KGF13766.1}; TaxID=1219626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus sp. MV1.;"
XRE family transcriptional regulator
L3_122_000G1_scaffold_291_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16739..17023)
DNA (285bp) protein (95aa)
Uncharacterized protein n=19 Tax=Clostridium difficile RepID=G6B5T5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29014.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_122_000G1_scaffold_291_22
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17116..19404)
DNA (2289bp) protein (763aa)
D12 class N6 adenine-specific DNA methyltransferase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CPE5_SYNLT
D12 class N6 adenine-specific DNA methyltransferase
D12 class N6 adenine-specific DNA methyltransferase {ECO:0000313|EMBL:ADI02580.1}; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
L3_122_000G1_scaffold_291_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19660..24666)
DNA (5007bp) protein (1669aa)
Superfamily I DNA and RNA helicases and helicase subunits-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV29_RUBXD
Uncharacterized protein {ECO:0000313|EMBL:KEH96790.1}; TaxID=1443125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. BKT12695.;"
superfamily I DNA/RNA helicase
L3_122_000G1_scaffold_291_24
unknown

Not on your lists

comp(24883..24993)
DNA (111bp) protein (37aa)

This feature has no annotations

L3_122_000G1_scaffold_291_25
Chlorobium limicola, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

25484..28174
DNA (2691bp) protein (897aa)
Type III restriction enzyme, res subunit n=4 Tax=Clostridium difficile RepID=T3SVD1_CLODI
type III restriction protein res subunit
Type III restriction protein res subunit {ECO:0000313|EMBL:ACD90412.1}; TaxID=290315 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium limicola (strain DSM 245 / NBRC 103803).;"
L3_122_000G1_scaffold_291_26
Methanocaldococcus sp. FS406-22, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(28191..29993)
DNA (1803bp) protein (601aa)
DNA methylase family protein n=4 Tax=Clostridium difficile RepID=T3SV67_CLODI
DNA methylase N-4/N-6 domain protein
DNA methylase N-4/N-6 domain protein {ECO:0000313|EMBL:ADC69581.1}; TaxID=644281 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus sp. (strain FS406-22).;"
L3_122_000G1_scaffold_291_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31081..31356)
DNA (276bp) protein (92aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T3SUT2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL23550.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_122_000G1_scaffold_291_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31604..32938)
DNA (1335bp) protein (445aa)
DnaB-like helicase N terminal domain protein n=3 Tax=Clostridium difficile RepID=T3ST94_CLODI
DnaB-like helicase N terminal domain protein {ECO:0000313|EMBL:EQF23220.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
phage-related replicative helicase
L3_122_000G1_scaffold_291_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32951..33694)
DNA (744bp) protein (248aa)
Putative phage protein n=1 Tax=Clostridium difficile CD160 RepID=T3D9Q8_CLODI
Putative phage protein {ECO:0000313|EMBL:EQF23310.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
putative phage protein
L3_122_000G1_scaffold_291_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33715..34029)
DNA (315bp) protein (105aa)
Excisionase from transposon Tn916 family protein n=9 Tax=Clostridium difficile RepID=T4R368_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL23554.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
Displaying items 1-30 of 72 in total

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