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L3_122_000G1_scaffold_825

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_825_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


322..2787
DNA (2466bp) protein (822aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Parabacteroides merdae RepID=A7AHX3_9PORP
L3_122_000G1_scaffold_825_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2822..3556
DNA (735bp) protein (245aa)
Probable transcriptional regulatory protein PARMER_03027 n=4 Tax=Parabacteroides RepID=A7AHX4_9PORP
Probable transcriptional regulatory protein HMPREF1060_00153 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000G1_scaffold_825_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3661..4458
DNA (798bp) protein (266aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5YT34_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13168.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000G1_scaffold_825_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4502..5557)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AZJ6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13167.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000G1_scaffold_825_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5624..6388)
DNA (765bp) protein (255aa)
UPF0246 protein PARMER_03031 n=2 Tax=Parabacteroides RepID=A7AHX8_9PORP
UPF0246 protein BN675_01665 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000G1_scaffold_825_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6431..7348)
DNA (918bp) protein (306aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6A2H1_9PORP
Putative membrane protein {ECO:0000313|EMBL:EDN85946.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000G1_scaffold_825_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7561..9828
DNA (2268bp) protein (756aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=K5YT37_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17322.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000G1_scaffold_825_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9906..10346)
DNA (441bp) protein (147aa)
Transcriptional regulator MarR family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y444_9PORP
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDD13162.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
MarR family transcriptional regulator
L3_122_000G1_scaffold_825_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10416..10805)
DNA (390bp) protein (130aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AHY4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85951.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_122_000G1_scaffold_825_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10830..11678)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A1A9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17325.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
cyclophilin type peptidyl-prolyl cis-trans isomerase
L3_122_000G1_scaffold_825_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11790..13466
DNA (1677bp) protein (559aa)
TrkA C-terminal domain protein n=4 Tax=Parabacteroides RepID=A7AHY6_9PORP
TrkA C-terminal domain protein {ECO:0000313|EMBL:EDN85953.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000G1_scaffold_825_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13590..18143)
DNA (4554bp) protein (1518aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YT40_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17327.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000G1_scaffold_825_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


18203..19231
DNA (1029bp) protein (343aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ANN6_9PORP
DNA-binding/iron metalloprotein/AP endonuclease
L3_122_000G1_scaffold_825_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19386..19850
DNA (465bp) protein (155aa)
Competence/damage-inducible domain protein CinA n=4 Tax=Parabacteroides RepID=A7AHY9_9PORP
Competence/damage-inducible domain protein CinA {ECO:0000313|EMBL:CDD13156.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
competence-damage inducible protein
L3_122_000G1_scaffold_825_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19868..20767)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A1B4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17330.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000G1_scaffold_825_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20774..21418)
DNA (645bp) protein (215aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Endonuclease III n=4 Tax=Parabacteroides RepID=A7AHZ1_9PORP
endonuclease III
L3_122_000G1_scaffold_825_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21422..21808)
DNA (387bp) protein (129aa)
Putative fluoride ion transporter CrcB n=4 Tax=Parabacteroides RepID=A7AHZ2_9PORP
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000G1_scaffold_825_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(21888..22907)
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Parabacteroides RepID=K6ANP2_9PORP
L3_122_000G1_scaffold_825_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23015..23428)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZNM2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17334.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000G1_scaffold_825_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23447..24379)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A1B8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17335.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
integral membrane protein
L3_122_000G1_scaffold_825_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24650..25399)
DNA (750bp) protein (250aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YT50_9PORP
gpmA; phosphoglyceromutase
L3_122_000G1_scaffold_825_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25622..26023
DNA (402bp) protein (134aa)
Putative nickel-responsive regulator n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ANP5_9PORP
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
transcriptional regulator nickel responsive regulator
L3_122_000G1_scaffold_825_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26112..27929
DNA (1818bp) protein (606aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZNM7_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:CDD13146.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent outer membrane receptor protein
L3_122_000G1_scaffold_825_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27976..28803
DNA (828bp) protein (276aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Parabacteroides merdae RepID=A7AI00_9PORP
L3_122_000G1_scaffold_825_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28806..30143
DNA (1338bp) protein (446aa)
Cobyrinic acid A,C-diamide synthase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A0X1_9PORP
Cobyrinic acid A,C-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
cobyrinic acid a,c-diamide synthase
L3_122_000G1_scaffold_825_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30170..30748
DNA (579bp) protein (193aa)
ATP:cob(I)alamin adenosyltransferase n=3 Tax=Parabacteroides RepID=A7AI02_9PORP
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:EDN85969.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATP:cob(I)alamin adenosyltransferase
L3_122_000G1_scaffold_825_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30829..31146
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ANQ0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17343.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
plasmid maintenance system killer
L3_122_000G1_scaffold_825_28
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31155..31499
DNA (345bp) protein (115aa)
Addiction module antidote protein HigA n=4 Tax=Parabacteroides RepID=B7BC18_9PORP
HigA family addiction module antidote protein {ECO:0000313|EMBL:EKN12451.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
XRE family transcriptional regulator
L3_122_000G1_scaffold_825_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31528..32886
DNA (1359bp) protein (453aa)
Peptidase dimerization domain protein n=3 Tax=Parabacteroides merdae RepID=A7AI05_9PORP
Peptidase dimerization domain protein {ECO:0000313|EMBL:EDN85972.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
succinyl-diaminopimelate desuccinylase
L3_122_000G1_scaffold_825_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32888..34198
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A0X5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17346.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
dead/deah box helicase domain-containing protein
Displaying items 1-30 of 86 in total

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