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L3_122_000G1_scaffold_3203

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_3203_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..625
DNA (624bp) protein (208aa)
Radical SAM domain protein n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3B2D4_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ67202.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_122_000G1_scaffold_3203_2
unknown

Not on your lists

775..1041
DNA (267bp) protein (89aa)

This feature has no annotations

L3_122_000G1_scaffold_3203_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(981..1337)
DNA (357bp) protein (119aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=C5EBK5_BIFLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY33488.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_122_000G1_scaffold_3203_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1698..4280
DNA (2583bp) protein (861aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Proline--tRNA ligase n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EBK7_BIFLI
prolyl-tRNA synthase
L3_122_000G1_scaffold_3203_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4363..6372)
DNA (2010bp) protein (670aa)
Endothelin-converting enzyme . Metallo peptidase. MEROPS family M13 n=7 Tax=Bifidobacterium RepID=D6DBQ7_BIFLN
Peptidase M13 {ECO:0000313|EMBL:KHD95693.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
pepO; pepo
L3_122_000G1_scaffold_3203_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6486..7466
DNA (981bp) protein (327aa)
Uncharacterized conserved protein n=14 Tax=Bacteria RepID=D6DBQ6_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44152.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_000G1_scaffold_3203_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7656..8438
DNA (783bp) protein (261aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Methionine aminopeptidase n=16 Tax=Bacteria RepID=F8ATD2_BIFLN
methionine aminopeptidase
L3_122_000G1_scaffold_3203_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8712..10004
DNA (1293bp) protein (431aa)
Citrate synthase n=15 Tax=Bifidobacterium RepID=D6ZVV1_BIFLJ
citrate synthase
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_000G1_scaffold_3203_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10218..11096)
DNA (879bp) protein (293aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_02122}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_02122};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_02122}; Tetrahydropicolinate succinylase {ECO:0000256|HAMAP-Rule:MF_02122}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=14 Tax=Bifidobacterium RepID=DAPD_BIFLO
dapD; dapd
L3_122_000G1_scaffold_3203_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11238..11387
DNA (150bp) protein (50aa)
Uncharacterized protein n=5 Tax=Bifidobacterium longum RepID=C2GVL1_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71722.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_122_000G1_scaffold_3203_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11372..12457)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=13 Tax=Bifidobacterium longum RepID=Q8G3M3_BIFLO
hypothetical protein
Transcriptional regulator {ECO:0000313|EMBL:AIW44148.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_122_000G1_scaffold_3203_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12535..16719
DNA (4185bp) protein (1395aa)
Possible helicase n=5 Tax=Bifidobacterium longum RepID=Q8G3M2_BIFLO
Bacterial SNF2 helicase associated {ECO:0000313|EMBL:EIJ28350.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
helicase
L3_122_000G1_scaffold_3203_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16901..17389
DNA (489bp) protein (163aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=B3DR77_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD99360.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_122_000G1_scaffold_3203_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17362..17880)
DNA (519bp) protein (173aa)
Acetyltransferase n=1 Tax=Bifidobacterium longum E18 RepID=V6XZX5_BIFLN
Acetyltransferase {ECO:0000313|EMBL:ESV34066.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
hypothetical protein
L3_122_000G1_scaffold_3203_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17963..18478
DNA (516bp) protein (172aa)
DNA mismatch endonuclease Vsr {ECO:0000313|EMBL:EEQ55413.1}; EC=3.1.-.- {ECO:0000313|EMBL:EEQ55413.1};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
T/G mismatch-specific endonuclease (EC:3.1.-.-)
DNA mismatch endonuclease Vsr n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EBL9_BIFLI
L3_122_000G1_scaffold_3203_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18509..19564)
DNA (1056bp) protein (352aa)
Hypothetical dehydrogenase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DRI1_BIFLD
mviM; dehydrogenase
Hypothetical dehydrogenase {ECO:0000313|EMBL:ACD99363.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_122_000G1_scaffold_3203_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19658..20881
DNA (1224bp) protein (408aa)
Probable aspartate aminotransferase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MSX7_9BIFI
aspartate aminotransferase
Probable aspartate aminotransferase {ECO:0000313|EMBL:AAN25525.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_122_000G1_scaffold_3203_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21059..22027
DNA (969bp) protein (323aa)
Exopolyphosphatase n=15 Tax=Bifidobacterium RepID=B3DRI3_BIFLD
exopolyphosphatase
Exopolyphosphatase {ECO:0000313|EMBL:ACD99365.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_122_000G1_scaffold_3203_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22043..22864)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3L5_BIFLO
endonuclease
Endonuclease {ECO:0000313|EMBL:KEY21591.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_000G1_scaffold_3203_20
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23522..23926
DNA (405bp) protein (135aa)
Acetyltransferase n=10 Tax=Bifidobacterium RepID=B3DRI5_BIFLD
NH2-acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:CCY94868.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_122_000G1_scaffold_3203_21
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24092..24520
DNA (429bp) protein (143aa)
Nucleoside 2-deoxyribosyltransferase n=14 Tax=Bifidobacterium RepID=D6DBP2_BIFLN
nucleoside 2-deoxyribosyltransferase
Putative nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:CCY94869.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_122_000G1_scaffold_3203_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24688..25194
DNA (507bp) protein (169aa)
Large-conductance mechanosensitive channel n=10 Tax=Bifidobacterium longum RepID=F8ATE6_BIFLN
large-conductance mechanosensitive channel
Large conductance mechanosensitive channel protein {ECO:0000313|EMBL:EIJ28381.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_122_000G1_scaffold_3203_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25314..27179
DNA (1866bp) protein (622aa)
Long-chain-fatty-acid--CoA ligase n=8 Tax=Bifidobacterium longum RepID=F8ATE7_BIFLN
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AEI96963.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
long-chain-fatty-acid--CoA ligase
L3_122_000G1_scaffold_3203_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27315..27416)
DNA (102bp) protein (34aa)
general stress protein n=1 Tax=Bifidobacterium longum RepID=UPI0000393456
oxidoreductase
Putative NADPH-quinone reductase (Modulator of drug activity B) {ECO:0000313|EMBL:CBK69910.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_122_000G1_scaffold_3203_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27439..27528)
DNA (90bp) protein (30aa)
NAD(P)H oxidoreductase n=2 Tax=Bifidobacterium longum RepID=S3DJ66_BIFLN
oxidoreductase
General stress protein {ECO:0000313|EMBL:KEY21596.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_122_000G1_scaffold_3203_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27652..27954)
DNA (303bp) protein (101aa)
Exonuclease VII small subunit. (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Exodeoxyribonuclease 7 small subunit n=12 Tax=Bifidobacterium RepID=D6DBN8_BIFLN
L3_122_000G1_scaffold_3203_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28004..29362)
DNA (1359bp) protein (453aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Exodeoxyribonuclease 7 large subunit n=12 Tax=Bifidobacterium RepID=E8MEQ0_BIFL2
exodeoxyribonuclease VII large subunit
L3_122_000G1_scaffold_3203_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29842..32250
DNA (2409bp) protein (803aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EIJ25135.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EIJ25135.1};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Ribonucleoside-triphosphate reductase class III catalytic subunit n=15 Tax=Bifidobacterium RepID=D6DBN6_BIFLN
ribonucleoside triphosphate reductase
L3_122_000G1_scaffold_3203_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32398..33126
DNA (729bp) protein (243aa)
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:EIJ28388.1}; EC=1.97.1.4 {ECO:0000313|EMBL:EIJ28388.1};; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=17 Tax=Bifidobacterium RepID=B3DRJ3_BIFLD
ribonucleoside-triphosphate reductase activating protein
L3_122_000G1_scaffold_3203_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33354..33476
DNA (123bp) protein (41aa)
Putative 2-hydroxyglutaryl-CoA dehydratase, D-component n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B177_BIFLN
activase
Activase {ECO:0000313|EMBL:AIW44132.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Displaying 30 items

View Taxonomy