ggKbase home page

L3_122_000G1_scaffold_890

Search features with annotation key words

Displaying items 1-30 of 38 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_890_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(347..1225)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG92897.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_122_000G1_scaffold_890_2
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1310..1816)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG92898.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_122_000G1_scaffold_890_3
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1882..2808)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I2N2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31257.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
stage 0 sporulation protein J
L3_122_000G1_scaffold_890_4
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2812..3579)
DNA (768bp) protein (256aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Roseburia RepID=C0FWU1_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EEG92900.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ATPases involved in chromosome partitioning
L3_122_000G1_scaffold_890_5
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3947..4465)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31255.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_122_000G1_scaffold_890_6
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4557..5171)
DNA (615bp) protein (205aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG92903.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_122_000G1_scaffold_890_7
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5597..6544
DNA (948bp) protein (316aa)
Alpha/beta hydrolase fold protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNJ0_9FIRM
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:CCY31253.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
alpha/beta hydrolase fold protein
L3_122_000G1_scaffold_890_8
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6738..7451)
DNA (714bp) protein (238aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I2M6_9FIRM
L3_122_000G1_scaffold_890_9
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7448..9385)
DNA (1938bp) protein (646aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWU9_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
glucose-inhibited division protein A
L3_122_000G1_scaffold_890_10
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9455..10828)
DNA (1374bp) protein (458aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
tRNA modification GTPase MnmE n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWV0_9FIRM
tRNA modification GTPase trmE
L3_122_000G1_scaffold_890_11
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10957..11592)
DNA (636bp) protein (212aa)
R3H domain protein n=2 Tax=Roseburia RepID=C0FWV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31249.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Predicted RNA-binding protein
L3_122_000G1_scaffold_890_12
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11649..12935)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31248.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L3_122_000G1_scaffold_890_13
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13189..13524)
DNA (336bp) protein (112aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Ribonuclease P protein component n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWV4_9FIRM
ribonuclease P
L3_122_000G1_scaffold_890_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13583..13717)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=3 Tax=Roseburia RepID=G2T624_ROSHA
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_122_000G1_scaffold_890_15
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14343..15698
DNA (1356bp) protein (452aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Roseburia RepID=C0FWV6_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
chromosomal replication initiator protein DnaA
L3_122_000G1_scaffold_890_16
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16034..17146
DNA (1113bp) protein (371aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=2 Tax=Roseburia RepID=C0FWV7_9FIRM
L3_122_000G1_scaffold_890_17
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17160..17375
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FWV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31243.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_122_000G1_scaffold_890_18
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17372..18463
DNA (1092bp) protein (364aa)
DNA replication and repair protein RecF n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWV9_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
recF protein
L3_122_000G1_scaffold_890_19
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18506..20428
DNA (1923bp) protein (641aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
DNA gyrase subunit B n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I380_9FIRM
DNA gyrase subunit B
L3_122_000G1_scaffold_890_20
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20577..23192
DNA (2616bp) protein (872aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=2 Tax=root RepID=C0FWW1_9FIRM
L3_122_000G1_scaffold_890_21
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23559..24566
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HSW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31239.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Predicted membrane protein
L3_122_000G1_scaffold_890_22
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24618..25463
DNA (846bp) protein (282aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.2)
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWW3_9FIRM
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type {ECO:0000313|EMBL:EEG92922.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_122_000G1_scaffold_890_23
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25552..26106
DNA (555bp) protein (185aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWW4_9FIRM
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type {ECO:0000313|EMBL:EEG92923.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_122_000G1_scaffold_890_24
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26266..27408
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I375_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31236.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Protein involved in cell division
L3_122_000G1_scaffold_890_25
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27432..29396
DNA (1965bp) protein (655aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG92926.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_122_000G1_scaffold_890_26
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29426..30343
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HSW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31234.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Predicted phosphoesterase
L3_122_000G1_scaffold_890_27
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30413..30895
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31233.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Acetyltransferase (GNAT) family.
L3_122_000G1_scaffold_890_28
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30949..31233
DNA (285bp) protein (95aa)
Acylphosphatases (EC:3.6.1.7)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I2L0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31232.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_122_000G1_scaffold_890_29
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31318..32802
DNA (1485bp) protein (495aa)
dipeptidase A. Cysteine peptidase. MEROPS family C69 (EC:3.4.-.-)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I369_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31231.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_122_000G1_scaffold_890_30
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32839..33309
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31230.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
Displaying items 1-30 of 38 in total

View Taxonomy