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L3_122_000G1_scaffold_54

Search features with annotation key words

Displaying items 1-30 of 146 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_54_1
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..135)
DNA (135bp) protein (45aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8X0_9FIRM
formate--tetrahydrofolate ligase
L3_122_000G1_scaffold_54_2
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(275..1093)
DNA (819bp) protein (273aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Clostridiales RepID=B0A8X1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI95810.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
cooC; carbon monoxide dehydrogenase accessory protein
L3_122_000G1_scaffold_54_3
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1217..3190)
DNA (1974bp) protein (658aa)
cooS; bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (EC:1.2.99.2)
Carbon-monoxide dehydrogenase, catalytic subunit n=2 Tax=Clostridiales RepID=B0A8X2_9FIRM
Carbon-monoxide dehydrogenase catalytic subunit {ECO:0000313|EMBL:CDA09581.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L3_122_000G1_scaffold_54_4
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3789..4931)
DNA (1143bp) protein (381aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8X3_9FIRM
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDQ96874.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L3_122_000G1_scaffold_54_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4955..6733)
DNA (1779bp) protein (593aa)
UPI0003D5BF55 related cluster n=1 Tax=unknown RepID=UPI0003D5BF55
Uncharacterized protein {ECO:0000313|EMBL:ETI95814.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
adenosylcobamide-dependent radical SAM protein
L3_122_000G1_scaffold_54_6
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6836..7036
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A8X5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA09578.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
conserved hypothetical protein
L3_122_000G1_scaffold_54_7
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7033..7956)
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A8X6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA09577.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
conserved hypothetical protein
L3_122_000G1_scaffold_54_8
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8086..9786)
DNA (1701bp) protein (567aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XLW6_9CLOT
L3_122_000G1_scaffold_54_9
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9893..10345)
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A8X8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA09575.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_122_000G1_scaffold_54_10
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10390..12768)
DNA (2379bp) protein (793aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
Endonuclease MutS2 n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XB13_9CLOT
DNA mismatch repair protein
L3_122_000G1_scaffold_54_11
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12965..14725)
DNA (1761bp) protein (587aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X1J2_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA09573.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ABC transporter
L3_122_000G1_scaffold_54_12
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15032..16477
DNA (1446bp) protein (482aa)
UPI0003D5D8A7 related cluster n=1 Tax=unknown RepID=UPI0003D5D8A7
Uncharacterized protein {ECO:0000313|EMBL:ETI94550.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
pepD; aminoacyl-histidine dipeptidase
L3_122_000G1_scaffold_54_13
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16501..18447
DNA (1947bp) protein (649aa)
Oligopeptide transporter, OPT family n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8Y2_9FIRM
Oligopeptide transporter, OPT family {ECO:0000313|EMBL:EDQ96883.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
oligopeptide transporter
L3_122_000G1_scaffold_54_14
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18440..18778
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X468_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA09570.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_122_000G1_scaffold_54_15
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18916..20541)
DNA (1626bp) protein (542aa)
Aspartate 4-decarboxylase {ECO:0000313|EMBL:EDQ96885.1}; EC=4.1.1.12 {ECO:0000313|EMBL:EDQ96885.1};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Aspartate 4-decarboxylase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8Y4_9FIRM
aspD; aminotransferase class I and II
L3_122_000G1_scaffold_54_16

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20972..21169
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ16868.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_122_000G1_scaffold_54_17

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comp(21232..24420)
DNA (3189bp) protein (1063aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ16869.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
sensor histidine kinase/response regulator
L3_122_000G1_scaffold_54_18
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24645..25085)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XLW1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA09566.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L3_122_000G1_scaffold_54_19
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25109..27529)
DNA (2421bp) protein (807aa)
Peptidase U32 family n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X465_9CLOT
Peptidase U32 family {ECO:0000313|EMBL:CDA09565.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
protease
L3_122_000G1_scaffold_54_20
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27812..29131)
DNA (1320bp) protein (440aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8Y9_9FIRM
L3_122_000G1_scaffold_54_21

Not on your lists

comp(29335..29952)
DNA (618bp) protein (206aa)
Cell division protein ZapA n=2 Tax=Clostridiales RepID=B0A8Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ16874.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
putative cell-division protein
L3_122_000G1_scaffold_54_22
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29981..32374)
DNA (2394bp) protein (798aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Clostridiales RepID=B0A8Z1_9FIRM
pheT; phenylalanyl-tRNA synthetase subunit beta
L3_122_000G1_scaffold_54_23
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(32503..33522)
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
pheS; Phenylalanyl-tRNA synthetase alpha chain(Phenylalanine--tRNA ligase alpha chain) (PheRS) (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Clostridiales RepID=B0A8Z2_9FIRM
L3_122_000G1_scaffold_54_24
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33909..34706)
DNA (798bp) protein (266aa)
Putative RNA methyltransferase, TrmH family, group 3 n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8Z3_9FIRM
Putative RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EDQ96894.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
RNA methylase
L3_122_000G1_scaffold_54_25
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34727..35410)
DNA (684bp) protein (228aa)
TrkA N-terminal domain protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XB00_9CLOT
TrkA N-terminal domain protein {ECO:0000313|EMBL:CDA09559.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
cation transport protein
L3_122_000G1_scaffold_54_26
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35433..36809)
DNA (1377bp) protein (459aa)
Potassium uptake protein, TrkH family n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8Z5_9FIRM
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EDQ96896.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
cation transport protein
L3_122_000G1_scaffold_54_27
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(37045..37401)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=2 Tax=Clostridiales RepID=B0A8Z6_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
rplT; 50S ribosomal protein L20
L3_122_000G1_scaffold_54_28
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(37494..37688)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=2 Tax=Clostridiales RepID=B0A8Z7_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
50S ribosomal protein L35
L3_122_000G1_scaffold_54_29

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comp(37729..38163)
DNA (435bp) protein (145aa)
Translation initiation factor IF-3 n=2 Tax=Clostridiales RepID=B0A8Z8_9FIRM
Translation initiation factor IF-3 {ECO:0000313|EMBL:ETJ16882.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
infC; translation initiation factor IF-3
L3_122_000G1_scaffold_54_30
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38808..40211
DNA (1404bp) protein (468aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XAZ6_9CLOT
ATP-dependent peptidase
Displaying items 1-30 of 146 in total

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