ggKbase home page

L3_122_000G1_scaffold_270

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000G1_scaffold_270_1
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(370..555)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XAB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA11800.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L3_122_000G1_scaffold_270_2
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(862..1677)
DNA (816bp) protein (272aa)
ABC 3 transport family protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XHC2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETI94526.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
ABC-type Mn2+/Zn2+ transport systems, permease components
L3_122_000G1_scaffold_270_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1670..2377)
DNA (708bp) protein (236aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6N1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDQ97843.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_122_000G1_scaffold_270_4
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2405..3472)
DNA (1068bp) protein (356aa)
UPI0003D5DD1A related cluster n=1 Tax=unknown RepID=UPI0003D5DD1A
Uncharacterized protein {ECO:0000313|EMBL:ETI94524.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
metal ABC transporter periplasmic protein
L3_122_000G1_scaffold_270_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3465..3902)
DNA (438bp) protein (146aa)
Transcriptional regulator, Fur family n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M9_9FIRM
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EDQ97841.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Fe2+/Zn2+ uptake regulation proteins
L3_122_000G1_scaffold_270_6
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4154..5677)
DNA (1524bp) protein (508aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XAB4_9CLOT
L3_122_000G1_scaffold_270_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5692..6168)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=2 Tax=Clostridiales RepID=B0A6M7_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
greA; transcription elongation factor GreA
L3_122_000G1_scaffold_270_8
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6276..7244)
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
UPI0003D5D623 related cluster n=1 Tax=unknown RepID=UPI0003D5D623
tRNA-dihydrouridine synthase
L3_122_000G1_scaffold_270_9
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7530..8300)
DNA (771bp) protein (257aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Type III pantothenate kinase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M5_9FIRM
pantothenate kinase
L3_122_000G1_scaffold_270_10
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8318..8923)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11791.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_122_000G1_scaffold_270_11
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9203..10180)
DNA (978bp) protein (326aa)
Peptidase family T4 n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M3_9FIRM
Peptidase family T4 {ECO:0000313|EMBL:EDQ97835.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
peptidase
L3_122_000G1_scaffold_270_12
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10173..11156)
DNA (984bp) protein (328aa)
UPI0003D62904 related cluster n=1 Tax=unknown RepID=UPI0003D62904
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
birA; BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase
L3_122_000G1_scaffold_270_13
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11349..13349)
DNA (2001bp) protein (667aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6M1_9FIRM
cell division protein
L3_122_000G1_scaffold_270_14
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13381..14769)
DNA (1389bp) protein (463aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
UPI0003D69465 related cluster n=1 Tax=unknown RepID=UPI0003D69465
ATPase
L3_122_000G1_scaffold_270_15
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15061..15468)
DNA (408bp) protein (136aa)
UPI0003D5DCC8 related cluster n=1 Tax=unknown RepID=UPI0003D5DCC8
Uncharacterized protein {ECO:0000313|EMBL:ETI96325.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
hypothetical protein
L3_122_000G1_scaffold_270_16
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15635..16342)
DNA (708bp) protein (236aa)
UPI0003D612E2 related cluster n=1 Tax=unknown RepID=UPI0003D612E2
Uncharacterized protein {ECO:0000313|EMBL:ETI96326.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
spore cortex-lytic enzyme
L3_122_000G1_scaffold_270_17
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16365..17087)
DNA (723bp) protein (241aa)
Stage II sporulation protein R n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6L7_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:EDQ97829.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
spoIIR; stage II sporulation protein
L3_122_000G1_scaffold_270_18
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17332..18000)
DNA (669bp) protein (223aa)
UPI0003D641CC related cluster n=1 Tax=unknown RepID=UPI0003D641CC
Uncharacterized protein {ECO:0000313|EMBL:ETI96328.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
GntR family transcriptional regulator
L3_122_000G1_scaffold_270_19
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17993..18874)
DNA (882bp) protein (294aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y560_9CLOT
L3_122_000G1_scaffold_270_20
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19005..20555)
DNA (1551bp) protein (517aa)
LysM domain protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XSL5_9CLOT
LysM domain protein {ECO:0000313|EMBL:CDA11781.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
cell wall hydrolase
L3_122_000G1_scaffold_270_21
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20638..20907)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6L3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97825.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L3_122_000G1_scaffold_270_22
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21111..21974)
DNA (864bp) protein (288aa)
Sporulation-specific protease n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XHA4_9CLOT
Sporulation-specific protease {ECO:0000313|EMBL:CDA11779.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
peptidase
L3_122_000G1_scaffold_270_23
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22124..22729
DNA (606bp) protein (202aa)
UPI0003D6060C related cluster n=1 Tax=unknown RepID=UPI0003D6060C
Uncharacterized protein {ECO:0000313|EMBL:ETI96333.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
hypothetical protein
L3_122_000G1_scaffold_270_24
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22745..23284
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97820.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L3_122_000G1_scaffold_270_25
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23370..25142)
DNA (1773bp) protein (591aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
Putative 1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K7_9FIRM
L3_122_000G1_scaffold_270_26
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25458..25955)
DNA (498bp) protein (166aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6K6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11775.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_122_000G1_scaffold_270_27
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26017..26721)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XHA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA11774.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_122_000G1_scaffold_270_28
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26740..27405)
DNA (666bp) protein (222aa)
Pseudouridine synthase, RluA family n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI96075.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
pseudouridylate synthase
L3_122_000G1_scaffold_270_29
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27405..28280)
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6K3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97815.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
putative SAM-dependent methyltransferase
L3_122_000G1_scaffold_270_30
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28525..29253
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI96073.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
hypothetical protein
Displaying items 1-30 of 73 in total

View Taxonomy