ggKbase home page

L3_122_000M1_scaffold_36

Search features with annotation key words

Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_36_1
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43..1152
DNA (1110bp) protein (370aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
Hydroxymethylpyrimidine phosphate synthase ThiC (EC:4.1.99.17)
phosphomethylpyrimidine synthase n=1 Tax=Alistipes sp. AP11 RepID=UPI00036BC5E8
L3_122_000M1_scaffold_36_2
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1543..2313
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00037B9BEC
Uncharacterized protein {ECO:0000313|EMBL:EOI25082.1}; TaxID=1158631 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0251.;"
hypothetical protein
L3_122_000M1_scaffold_36_3
unknown

Not on your lists

comp(2804..4225)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002E7550B
L3_122_000M1_scaffold_36_4
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4863..5543)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00030A8F7B
Uncharacterized protein {ECO:0000313|EMBL:EHB92549.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
L3_122_000M1_scaffold_36_5
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5694..7379)
DNA (1686bp) protein (562aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
glutaminyl-tRNA synthetase n=1 Tax=Alistipes sp. AP11 RepID=UPI000303CF7C
L3_122_000M1_scaffold_36_6
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7885..10023)
DNA (2139bp) protein (713aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0003031BBA
Uncharacterized protein {ECO:0000313|EMBL:EHB92551.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
V8-like Glu-specific endopeptidase
L3_122_000M1_scaffold_36_7
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10078..11034)
DNA (957bp) protein (319aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
quinolinate synthetase (EC:2.5.1.72)
quinolinate synthetase n=1 Tax=Alistipes sp. AP11 RepID=UPI000307A060
L3_122_000M1_scaffold_36_8
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11508..12578)
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002D747DD
Uncharacterized protein {ECO:0000313|EMBL:EHB92553.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
chromosome partitioning ATPase
L3_122_000M1_scaffold_36_9
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12703..14499
DNA (1797bp) protein (599aa)
signal peptide peptidase SppA, 67K type (EC:3.4.21.-)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0003011C7F
Signal peptide peptidase SppA, 67K type {ECO:0000313|EMBL:EHB92554.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
L3_122_000M1_scaffold_36_10
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14621..15694
DNA (1074bp) protein (358aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
Tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00037E3DB8
L3_122_000M1_scaffold_36_11
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15651..16454
DNA (804bp) protein (268aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
purine nucleoside phosphorylase I, inosine and guanosine-specific (EC:2.4.2.1)
purine nucleoside phosphorylase n=1 Tax=Alistipes sp. AP11 RepID=UPI000309E8F4
L3_122_000M1_scaffold_36_12
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16630..17118
DNA (489bp) protein (163aa)
single-stranded DNA-binding protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002D4FDDF
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
single stranded DNA-binding protein
L3_122_000M1_scaffold_36_13
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17276..17623
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI000304C645
Uncharacterized protein {ECO:0000313|EMBL:EHB92558.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
translation initiation factor eIF-1/SUI1-like protein
L3_122_000M1_scaffold_36_14
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17627..20470
DNA (2844bp) protein (948aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00035C38A6
Uncharacterized protein {ECO:0000313|EMBL:EHB92559.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein
L3_122_000M1_scaffold_36_15
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20802..23174
DNA (2373bp) protein (791aa)
membrane carboxypeptidase/penicillin-binding protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0003044F75
Uncharacterized protein {ECO:0000313|EMBL:EHB92562.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
membrane carboxypeptidase/penicillin-binding protein
L3_122_000M1_scaffold_36_16
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23359..24369
DNA (1011bp) protein (337aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
aspartate-semialdehyde dehydrogenase n=1 Tax=Alistipes sp. AP11 RepID=UPI0003131FC3
aspartate-semialdehyde dehydrogenase
L3_122_000M1_scaffold_36_17
unknown

Not on your lists

24858..25382
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI000315C20D
L3_122_000M1_scaffold_36_18
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25824..27194)
DNA (1371bp) protein (457aa)
DNA repair protein RadA n=1 Tax=Alistipes sp. AP11 RepID=UPI0002EF37AD
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
DNA repair protein RadA
L3_122_000M1_scaffold_36_19
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27494..28825)
DNA (1332bp) protein (444aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002D3D348
zinc metalloprotease
L3_122_000M1_scaffold_36_20
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28847..30001)
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002D8EF34
L3_122_000M1_scaffold_36_21
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30064..30939)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002DE8341
Uncharacterized protein {ECO:0000313|EMBL:EHB92722.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
Membrane-bound metallopeptidase
L3_122_000M1_scaffold_36_22
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31244..32122
DNA (879bp) protein (293aa)
nucleotidyltransferase n=1 Tax=Alistipes sp. AP11 RepID=UPI000314841D
Uncharacterized protein {ECO:0000313|EMBL:EHB92723.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
dTDP-glucose pyrophosphorylase
L3_122_000M1_scaffold_36_23
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32299..33351
DNA (1053bp) protein (351aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
Aldose 1-epimerase (EC:5.1.3.3)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002E072C2
L3_122_000M1_scaffold_36_24
Prevotella bergensis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33520..34722
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00030F5FA7
Glucose/galactose transporter {ECO:0000313|EMBL:EFA45439.1}; TaxID=585502 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella bergensis DSM 17361.;"
fucose permease
L3_122_000M1_scaffold_36_25
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

34844..35827
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002D5432F
NAD-dependent epimerase/dehydratase
NAD-dependent dehydratase {ECO:0000313|EMBL:KGO93374.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
L3_122_000M1_scaffold_36_26
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36005..37276)
DNA (1272bp) protein (424aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
aspartate kinase (EC:2.7.2.4)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI000370CB78
L3_122_000M1_scaffold_36_27
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37688..39814)
DNA (2127bp) protein (709aa)
prolyl oligopeptidase . Serine peptidase. MEROPS family S09A (EC:3.4.21.26)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002EAFD34
Uncharacterized protein {ECO:0000313|EMBL:EHB93274.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
L3_122_000M1_scaffold_36_28
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40091..40927
DNA (837bp) protein (279aa)
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase n=1 Tax=Alistipes sp. AP11 RepID=UPI0002FF6594
Putative 2 3 4 5-tetrahydropyridine-2 6-dicarboxylate N-succinyltransferase {ECO:0000313|EMBL:CCZ76506.1}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
tetrahydrodipicolinate N-succinyltransferase
L3_122_000M1_scaffold_36_29
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41027..42664
DNA (1638bp) protein (546aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002F9F00E
Uncharacterized protein {ECO:0000313|EMBL:EHB93272.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
Na/Pi cotransporter
L3_122_000M1_scaffold_36_30
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

42677..43492
DNA (816bp) protein (272aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
BirA, biotin-[acetyl-CoA-carboxylase] ligase region {ECO:0000313|EMBL:CBK64573.1}; EC=6.3.4.15 {ECO:0000313|EMBL:CBK64573.1};; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00037568C7
Displaying items 1-30 of 135 in total

View Taxonomy