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L3_122_000M1_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_85_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3..1016
DNA (1014bp) protein (338aa)
YbbR-like protein n=2 Tax=Parabacteroides merdae RepID=A7AKC1_9PORP
YbbR-like protein {ECO:0000313|EMBL:EDN84443.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_85_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1009..1638
DNA (630bp) protein (210aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Dephospho-CoA kinase n=2 Tax=Parabacteroides merdae RepID=A7AKC2_9PORP
dephospho-CoA kinase
L3_122_000M1_scaffold_85_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1768..2211
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y819_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14507.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_85_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2208..2360)
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AKC4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84446.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_122_000M1_scaffold_85_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2576..2809)
DNA (234bp) protein (78aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AKC5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84448.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transposase
L3_122_000M1_scaffold_85_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3047..3616)
DNA (570bp) protein (190aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AKC7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84449.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transposase
L3_122_000M1_scaffold_85_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3768..6230)
DNA (2463bp) protein (821aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Lon protease n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YW55_9PORP
ATP-dependent protease
L3_122_000M1_scaffold_85_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6359..7075
DNA (717bp) protein (239aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
tRNA1(Val) (adenine(37)-N6)-methyltransferase n=2 Tax=Parabacteroides merdae RepID=A7AKC9_9PORP
hypothetical protein
L3_122_000M1_scaffold_85_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7060..8031)
DNA (972bp) protein (324aa)
Lipid kinase, YegS/Rv2252/BmrU family n=2 Tax=Parabacteroides merdae RepID=A7AKD0_9PORP
Lipid kinase, YegS/Rv2252/BmrU family {ECO:0000313|EMBL:EDN84452.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_85_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8227..9414
DNA (1188bp) protein (396aa)
8-amino-7-oxononanoate synthase n=3 Tax=Parabacteroides RepID=K6BHZ2_9PORP
Putative 8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:CDD13316.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
8-amino-7-oxononanoate synthase
L3_122_000M1_scaffold_85_11
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9524..10996
DNA (1473bp) protein (491aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=R5DIH3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX78584.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
hypothetical protein
L3_122_000M1_scaffold_85_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11461..12945)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6AVS8_9PORP
Cell cycle protein FtsW/RodA/SpoVE family {ECO:0000313|EMBL:CDD13319.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rod shape-determining protein RodA
L3_122_000M1_scaffold_85_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12896..14773)
DNA (1878bp) protein (626aa)
Penicillin-binding protein 2 n=2 Tax=Parabacteroides merdae RepID=A7AKD5_9PORP
Penicillin-binding protein 2 {ECO:0000313|EMBL:EDN84457.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
penicillin-binding protein 2
L3_122_000M1_scaffold_85_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14763..15281)
DNA (519bp) protein (173aa)
Rod shape-determining protein MreD n=3 Tax=Parabacteroides RepID=A7AKD6_9PORP
Rod shape-determining protein MreD {ECO:0000313|EMBL:EDN84458.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_85_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15274..16128)
DNA (855bp) protein (285aa)
Cell shape-determining protein MreC n=3 Tax=Parabacteroides RepID=R6Y4K2_9PORP
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
rod shape-determining protein MreC
L3_122_000M1_scaffold_85_16
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16229..17248)
DNA (1020bp) protein (340aa)
Cell shape determining protein, MreB/Mrl family n=7 Tax=Parabacteroides RepID=A7AKD8_9PORP
MreB/Mrl family cell shape determining protein {ECO:0000313|EMBL:EKN12328.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
rod shape-determining protein MreB
L3_122_000M1_scaffold_85_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17356..18879)
DNA (1524bp) protein (508aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10)
Bifunctional purine biosynthesis protein purH n=2 Tax=Parabacteroides merdae RepID=K6AVS2_9PORP
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_122_000M1_scaffold_85_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19042..19230)
DNA (189bp) protein (63aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AKE0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13325.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_122_000M1_scaffold_85_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19747..20658)
DNA (912bp) protein (304aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AKE2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13326.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_85_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20679..21143)
DNA (465bp) protein (155aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AKE3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13327.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_85_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21156..21701)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPU4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13328.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_85_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21719..22213)
DNA (495bp) protein (165aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z8A8_9PORP
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKN07350.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RNA polymerase ECF-type sigma factor
L3_122_000M1_scaffold_85_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22291..22872
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WVG7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13330.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_85_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22890..23522)
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AKE7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84469.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_85_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23567..24463)
DNA (897bp) protein (299aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZLA9_9PORP
Putative membrane protein {ECO:0000313|EMBL:EDN84470.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
permease
L3_122_000M1_scaffold_85_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24522..25397)
DNA (876bp) protein (292aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPU9_9PORP
L3_122_000M1_scaffold_85_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25414..27012
DNA (1599bp) protein (533aa)
TrkA C-terminal domain protein n=2 Tax=Parabacteroides merdae RepID=A7AKF0_9PORP
TrkA C-terminal domain protein {ECO:0000313|EMBL:EDN84471.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transporter
L3_122_000M1_scaffold_85_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27111..29237
DNA (2127bp) protein (709aa)
HRDC domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WVH3_9PORP
HRDC domain protein {ECO:0000313|EMBL:CDD13335.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
helicase
L3_122_000M1_scaffold_85_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29301..29921)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAF1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13336.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_85_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30018..31016)
DNA (999bp) protein (333aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=4 Tax=Parabacteroides RepID=A7AKF4_9PORP
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EKN07358.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Displaying items 1-30 of 96 in total

View Taxonomy