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L3_122_000M1_scaffold_180

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Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_180_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..104)
DNA (102bp) protein (34aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Argininosuccinate synthase n=4 Tax=root RepID=D4L5Z2_9FIRM
L3_122_000M1_scaffold_180_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

558..920
DNA (363bp) protein (121aa)
Uncharacterized conserved protein n=2 Tax=root RepID=D4L5Z3_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL15038.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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971..1480
DNA (510bp) protein (170aa)
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family n=2 Tax=Ruminococcus RepID=D4L5Z4_9FIRM
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family {ECO:0000313|EMBL:CBL15039.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1643..5731)
DNA (4089bp) protein (1363aa)
Glycosidases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z5_9FIRM
Glycosidases {ECO:0000313|EMBL:CBL15040.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glycosidases
L3_122_000M1_scaffold_180_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6036..7250)
DNA (1215bp) protein (405aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Signal transduction histidine kinase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z6_9FIRM
Signal transduction histidine kinase
L3_122_000M1_scaffold_180_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7250..7897)
DNA (648bp) protein (216aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVH8_9FIRM
Two component transcriptional regulator winged helix family {ECO:0000313|EMBL:CCX84153.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
winged helix family two component transcriptional regulator
L3_122_000M1_scaffold_180_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8068..10713)
DNA (2646bp) protein (882aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z7_9FIRM
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:CBL15042.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_122_000M1_scaffold_180_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10716..11387)
DNA (672bp) protein (224aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZ21_9FIRM
ABC-type antimicrobial peptide transport system ATPase component {ECO:0000313|EMBL:CCX84149.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_180_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11887..12801)
DNA (915bp) protein (305aa)
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z9_9FIRM
L3_122_000M1_scaffold_180_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12798..13739)
DNA (942bp) protein (314aa)
Exopolyphosphatase-related proteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV79_9FIRM
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CCX84145.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Exopolyphosphatase-related proteins
L3_122_000M1_scaffold_180_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13723..14100)
DNA (378bp) protein (126aa)
Ribosome-binding factor A n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L601_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000313|EMBL:CBL15046.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14230..16593)
DNA (2364bp) protein (788aa)
Translation initiation factor IF-2 n=2 Tax=root RepID=R5DZ13_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
bacterial translation initiation factor 2 (bIF-2)
L3_122_000M1_scaffold_180_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16580..16912)
DNA (333bp) protein (111aa)
Ribosomal protein HS6-type (S12/L30/L7a) n=2 Tax=Ruminococcus RepID=D4L603_9FIRM
Ribosomal protein HS6-type (S12/L30/L7a)
Ribosomal protein HS6-type (S12/L30/L7a) {ECO:0000313|EMBL:CCX84138.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_180_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16928..17236)
DNA (309bp) protein (103aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=2 Tax=root RepID=R5E5U1_9FIRM
Predicted nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:CCX84137.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_122_000M1_scaffold_180_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17261..18421)
DNA (1161bp) protein (387aa)
Transcription termination factor NusA n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L605_9FIRM
transcription termination factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18507..19115)
DNA (609bp) protein (203aa)
Ribosome maturation factor RimP n=2 Tax=Ruminococcus RepID=D4L606_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_180_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19837..20529
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E5T5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX84127.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_180_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20551..21555
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E7M0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15058.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21840..22538)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L614_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15059.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22731..23336
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L615_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15060.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23622..26525
DNA (2904bp) protein (968aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVF5_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:CCX84123.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_180_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26525..27868
DNA (1344bp) protein (448aa)
Uncharacterized protein conserved in bacteria n=4 Tax=root RepID=D4L616_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL15061.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28012..28809
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7L5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84121.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_180_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29050..30789)
DNA (1740bp) protein (580aa)
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV58_9FIRM
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain {ECO:0000313|EMBL:CCX84120.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_122_000M1_scaffold_180_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31322..32188
DNA (867bp) protein (289aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84119.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_180_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32459..33007
DNA (549bp) protein (183aa)
Uncharacterized conserved protein n=2 Tax=Ruminococcus RepID=D4L619_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL15064.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_180_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33033..33395
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84115.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_180_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33786..35483
DNA (1698bp) protein (566aa)
FHA domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5S3_9FIRM
FHA domain protein {ECO:0000313|EMBL:CCX84112.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_180_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35652..37049
DNA (1398bp) protein (466aa)
Penicillin-binding protein transpeptidase domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV50_9FIRM
Penicillin-binding protein transpeptidase domain protein {ECO:0000313|EMBL:CCX84110.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_180_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37117..39984
DNA (2868bp) protein (956aa)
Protein translocase subunit SecA n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L620_9FIRM
protein translocase subunit secA
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 1-30 of 58 in total

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