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L3_122_000M1_scaffold_218

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_218_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..261)
DNA (261bp) protein (87aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Putative N-acetylmannosamine-6-phosphate epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=2 Tax=Roseburia RepID=C0FQ78_9FIRM
L3_122_000M1_scaffold_218_2
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(280..726)
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FQ77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31260.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_122_000M1_scaffold_218_3
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(873..1802)
DNA (930bp) protein (310aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase (EC:4.1.3.3)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I3A0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31261.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_122_000M1_scaffold_218_4
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1876..2811)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I2N6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31262.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_122_000M1_scaffold_218_5
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2828..3736)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31263.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_122_000M1_scaffold_218_6
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3844..5232)
DNA (1389bp) protein (463aa)
ABC transporter, solute-binding protein n=2 Tax=Roseburia RepID=C0FQ72_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EEG95272.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_122_000M1_scaffold_218_7
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5611..6459
DNA (849bp) protein (283aa)
Transcriptional regulator, RpiR family n=2 Tax=Roseburia RepID=C0FQ71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31265.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Transcriptional regulators
L3_122_000M1_scaffold_218_8
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6603..7355)
DNA (753bp) protein (251aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Glucosamine-6-phosphate deaminase n=2 Tax=Roseburia RepID=C0FQ70_9FIRM
glucosamine-6-phosphate isomerase
L3_122_000M1_scaffold_218_9
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7355..8185)
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R5I2N9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31267.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Transcriptional regulators
L3_122_000M1_scaffold_218_10
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8405..9844)
DNA (1440bp) protein (480aa)
Predicted ATPase of the AAA superfamily n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNK2_9FIRM
Predicted ATPase of the AAA superfamily {ECO:0000313|EMBL:CCY31268.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
putative ATPase of the AAA superfamily
L3_122_000M1_scaffold_218_11
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10051..10578)
DNA (528bp) protein (176aa)
Nitroreductase family protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQ67_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EEG95267.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Nitroreductase
L3_122_000M1_scaffold_218_12
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10750..11958)
DNA (1209bp) protein (403aa)
Glycerate kinase {ECO:0000313|EMBL:EEG95259.1}; EC=2.7.1.31 {ECO:0000313|EMBL:EEG95259.1};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
glycerate kinase (EC:2.7.1.31)
Glycerate kinase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQ59_9FIRM
L3_122_000M1_scaffold_218_13
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12034..12702)
DNA (669bp) protein (223aa)
HAD hydrolase, family IA n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N1S3_9FIRM
HAD hydrolase, family IA {ECO:0000313|EMBL:EOS76901.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_122_000M1_scaffold_218_14
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12835..13743
DNA (909bp) protein (303aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N327_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCY98395.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
transcriptional regulator, AraC family
L3_122_000M1_scaffold_218_15
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13744..14940)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HT00_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31274.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_122_000M1_scaffold_218_16
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15380..16153)
DNA (774bp) protein (258aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FQ55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31276.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_122_000M1_scaffold_218_17
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16238..18193)
DNA (1956bp) protein (652aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I2P8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31277.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
L3_122_000M1_scaffold_218_18
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18362..21382)
DNA (3021bp) protein (1007aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNL3_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:CCY31278.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Beta-glucosidase-related glycosidases
L3_122_000M1_scaffold_218_19
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21573..22886)
DNA (1314bp) protein (438aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HT05_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCY31279.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
signal transduction histidine kinase regulating citrate/malate metabolism
L3_122_000M1_scaffold_218_20
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22888..23601)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31280.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Response regulator of the LytR/AlgR family
L3_122_000M1_scaffold_218_21
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23672..23839)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FQ51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31281.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_122_000M1_scaffold_218_22
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23975..24127)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQ50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG95250.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_122_000M1_scaffold_218_23
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24451..25089)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQ49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG95249.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
GtrA-like protein.
L3_122_000M1_scaffold_218_24
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25188..26387)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQ48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG95248.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_122_000M1_scaffold_218_25
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26559..27332)
DNA (774bp) protein (258aa)
Purine or other phosphorylase family 1 n=1 Tax=Clostridium sp. CAG:242 RepID=R6CUS7_9CLOT
Purine or other phosphorylase family 1 {ECO:0000313|EMBL:CDA76554.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
purine phosphorylase family 1
L3_122_000M1_scaffold_218_26
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27775..28794)
DNA (1020bp) protein (340aa)
M42 glutamyl aminopeptidase n=1 Tax=Coprococcus comes CAG:19 RepID=R6LIS6_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:CDB85760.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
endoglucanase
L3_122_000M1_scaffold_218_27
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28778..29449)
DNA (672bp) protein (224aa)
Beta-phosphoglucomutase n=1 Tax=Coprococcus comes CAG:19 RepID=R6LUD7_9FIRM
Beta-phosphoglucomutase {ECO:0000313|EMBL:CDB85761.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
beta-phosphoglucomutase
L3_122_000M1_scaffold_218_28
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29421..30326)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Coprococcus comes CAG:19 RepID=R6MIM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB85762.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
hypothetical protein
L3_122_000M1_scaffold_218_29
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30347..32659)
DNA (2313bp) protein (771aa)
Kojibiose phosphorylase n=1 Tax=Coprococcus comes CAG:19 RepID=R6LE29_9FIRM
Kojibiose phosphorylase {ECO:0000313|EMBL:CDB85763.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
glycoside hydrolase
L3_122_000M1_scaffold_218_30
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32686..35676)
DNA (2991bp) protein (997aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Beta galactosidase small chain n=1 Tax=Coprococcus comes CAG:19 RepID=R6LQC5_9FIRM
glycoside hydrolase
Displaying items 1-30 of 65 in total

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