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L3_122_000M1_scaffold_227

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_227_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1502
DNA (1500bp) protein (500aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVF5_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L3_122_000M1_scaffold_227_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1629..2459
DNA (831bp) protein (277aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVF6_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL11346.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_227_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2477..2737
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GHC9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11347.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_227_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2697..3134
DNA (438bp) protein (146aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GHC8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU98777.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_122_000M1_scaffold_227_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3194..3472
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVF9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11349.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_227_6
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3644..4030)
DNA (387bp) protein (129aa)
Site-specific recombinase, phage integrase family n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BF35_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEG87880.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
hypothetical protein
L3_122_000M1_scaffold_227_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4277..5041
DNA (765bp) protein (255aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=3 Tax=Roseburia RepID=D4KPQ4_9FIRM
Methylase involved in ubiquinone/menaquinone biosynthesis
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:CBL08856.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_227_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5107..5484)
DNA (378bp) protein (126aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GGJ8_9FIRM
hypothetical protein
TnpV protein {ECO:0000313|EMBL:CDA57109.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_227_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5907..6011)
DNA (105bp) protein (35aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6BV50_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57107.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_227_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6104..8875
DNA (2772bp) protein (924aa)
Putative secreted protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BDE2_9FIRM
Putative secreted protein {ECO:0000313|EMBL:CDA57106.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
IgA Peptidase M64.
L3_122_000M1_scaffold_227_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9048..10052
DNA (1005bp) protein (335aa)
Predicted transcription factor, homolog of eukaryotic MBF1 n=3 Tax=Roseburia RepID=D4KPQ8_9FIRM
Predicted transcription factor, homolog of eukaryotic MBF1
Predicted transcription factor, homolog of eukaryotic MBF1 {ECO:0000313|EMBL:CBL08860.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_227_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10434..11939
DNA (1506bp) protein (502aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884, ECO:0000313|EMBL:CBL11356.1}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Transcription termination factor Rho n=3 Tax=Roseburia RepID=D4KPR0_9FIRM
transcription termination factor Rho
L3_122_000M1_scaffold_227_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12098..12301
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=4 Tax=Roseburia RepID=D4KPR1_9FIRM
LSU ribosomal protein L31P
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_227_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12460..13440
DNA (981bp) protein (327aa)
Predicted metal-dependent enzyme n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1V4_9FIRM
Predicted metal-dependent enzyme {ECO:0000313|EMBL:CDA57100.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted metal-dependent enzyme
L3_122_000M1_scaffold_227_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13418..14263
DNA (846bp) protein (282aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Release factor glutamine methyltransferase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B872_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L3_122_000M1_scaffold_227_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14248..15321
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 n=4 Tax=Roseburia RepID=D4KVH0_9FIRM
bacterial peptide chain release factor 1 (bRF-1)
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_227_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15722..16330
DNA (609bp) protein (203aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GGI8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08868.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_227_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16477..17913
DNA (1437bp) protein (479aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Divergent AAA domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGI7_9FIRM
Divergent AAA domain protein {ECO:0000313|EMBL:EEU99059.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_122_000M1_scaffold_227_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18065..19753
DNA (1689bp) protein (563aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|SAAS:SAAS00023088}; EC=6.1.1.18 {ECO:0000256|SAAS:SAAS00023088};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Glutaminyl-tRNA synthetase n=4 Tax=Roseburia RepID=D4KVH2_9FIRM
L3_122_000M1_scaffold_227_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19816..20667
DNA (852bp) protein (284aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Roseburia RepID=D4KPR9_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA57094.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_227_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20679..22169
DNA (1491bp) protein (497aa)
Transcriptional regulator, GntR family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGI4_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEU99056.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
L3_122_000M1_scaffold_227_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22162..22803)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVH5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11365.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_227_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22945..24675
DNA (1731bp) protein (577aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVH6_9FIRM
ABC-type dipeptide transport system, periplasmic component
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:CBL11366.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_227_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24691..25659
DNA (969bp) protein (323aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVH7_9FIRM
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain {ECO:0000313|EMBL:CBL11367.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_227_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25667..26674
DNA (1008bp) protein (336aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGH8_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU99077.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L3_122_000M1_scaffold_227_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26708..27655
DNA (948bp) protein (316aa)
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components n=4 Tax=Roseburia RepID=D4KPS5_9FIRM
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components {ECO:0000313|EMBL:CBL08877.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_227_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27671..28546
DNA (876bp) protein (292aa)
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components n=4 Tax=Roseburia intestinalis RepID=D4KPS6_9FIRM
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components {ECO:0000313|EMBL:CBL08878.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_227_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28695..29828
DNA (1134bp) protein (378aa)
Amidohydrolase n=2 Tax=Roseburia intestinalis RepID=D4KVI1_9FIRM
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:CBL11371.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_227_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29987..31219)
DNA (1233bp) protein (411aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1U1_9FIRM
L3_122_000M1_scaffold_227_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31609..32664
DNA (1056bp) protein (352aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
N-acetyl-gamma-glutamyl-phosphate reductase, common form (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVI3_9FIRM
Displaying items 1-30 of 64 in total

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