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L3_122_000M1_scaffold_289

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_289_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(186..407)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81674.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_289_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(420..1613)
DNA (1194bp) protein (398aa)
cystathionine gamma-synthase (EC:2.5.1.48 4.4.1.1)
Cystathionine gamma-synthase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DN48_9FIRM
Cystathionine gamma-synthase {ECO:0000313|EMBL:CCX81675.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_289_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1979..2392)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L692_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15137.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2404..4386)
DNA (1983bp) protein (661aa)
Sortase, SrtB family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L691_9FIRM
sortase, SrtB family
Sortase, SrtB family {ECO:0000313|EMBL:CBL15136.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4379..5560)
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Probable tRNA sulfurtransferase n=3 Tax=root RepID=D4L690_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L3_122_000M1_scaffold_289_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5600..6763)
DNA (1164bp) protein (388aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYK8_9FIRM
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes {ECO:0000313|EMBL:CCX81682.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_289_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6877..7332
DNA (456bp) protein (152aa)
Stage V sporulation protein AC n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNA4_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CCX81683.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
stage V sporulation protein AC
L3_122_000M1_scaffold_289_8
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7401..8165)
DNA (765bp) protein (255aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QCA4_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCZ19871.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Predicted transcriptional regulators
L3_122_000M1_scaffold_289_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8958..10160)
DNA (1203bp) protein (401aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Ruminococcus RepID=D4L687_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10276..12375)
DNA (2100bp) protein (700aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Elongation factor G n=3 Tax=root RepID=D4L686_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_289_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12407..12877)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=root RepID=R5DS85_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
rpsG; 30S ribosomal protein S7
L3_122_000M1_scaffold_289_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13035..13454)
DNA (420bp) protein (140aa)
30S ribosomal protein S12 n=2 Tax=Ruminococcus RepID=D4L685_9FIRM
SSU ribosomal protein S12P
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14295..15950)
DNA (1656bp) protein (552aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Glycosidases (EC:3.2.1.1)
Glycosidases n=2 Tax=root RepID=R5DYL9_9FIRM
L3_122_000M1_scaffold_289_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16022..16885)
DNA (864bp) protein (288aa)
ABC-type maltose transport systems permease component n=2 Tax=root RepID=R5DNB4_9FIRM
ABC-type maltose transport systems permease component {ECO:0000313|EMBL:CCX81693.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type maltose transport systems, permease component
L3_122_000M1_scaffold_289_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16882..18381)
DNA (1500bp) protein (500aa)
ABC-type sugar transport systems, permease components n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L682_9FIRM
ABC-type sugar transport systems, permease components
ABC-type sugar transport systems, permease components {ECO:0000313|EMBL:CBL15127.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_16
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18618..19955)
DNA (1338bp) protein (446aa)
Maltose-binding periplasmic proteins/domains n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L681_9FIRM
Maltose-binding periplasmic proteins/domains
Maltose-binding periplasmic proteins/domains {ECO:0000313|EMBL:CBL15126.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20478..21947
DNA (1470bp) protein (490aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS94_9FIRM
L3_122_000M1_scaffold_289_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22025..22765)
DNA (741bp) protein (247aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL15124.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBL15124.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L679_9FIRM
L3_122_000M1_scaffold_289_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22935..24626)
DNA (1692bp) protein (564aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamine--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L678_9FIRM
L3_122_000M1_scaffold_289_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24652..26106)
DNA (1455bp) protein (485aa)
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000313|EMBL:CBL15122.1};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamate--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L677_9FIRM
L3_122_000M1_scaffold_289_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26360..27709)
DNA (1350bp) protein (450aa)
Serine protease inhibitor n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L676_9FIRM
Serine protease inhibitor
Serine protease inhibitor {ECO:0000313|EMBL:CBL15121.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27706..28848)
DNA (1143bp) protein (381aa)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase (EC:2.4.1.157)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYN2_9FIRM
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase {ECO:0000313|EMBL:CCX81707.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_289_23
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29313..31010
DNA (1698bp) protein (566aa)
Uncharacterized vancomycin resistance protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L674_9FIRM
Uncharacterized vancomycin resistance protein
Uncharacterized vancomycin resistance protein {ECO:0000313|EMBL:CBL15119.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31084..32094
DNA (1011bp) protein (337aa)
Stage V sporulation protein AD (SpoVAD) n=2 Tax=root RepID=R5DSA5_9FIRM
Stage V sporulation protein AD (SpoVAD) {ECO:0000313|EMBL:CCX81709.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Stage V sporulation protein AD (SpoVAD).
L3_122_000M1_scaffold_289_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32237..32785
DNA (549bp) protein (183aa)
Membrane-associated phospholipid phosphatase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DN80_9FIRM
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:CCX81710.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Membrane-associated phospholipid phosphatase
L3_122_000M1_scaffold_289_26
unknown

Not on your lists

comp(32680..32967)
DNA (288bp) protein (96aa)
hypothetical protein
L3_122_000M1_scaffold_289_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33076..33264
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DYN6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15115.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_289_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33689..34945)
DNA (1257bp) protein (419aa)
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Serine hydroxymethyltransferase n=2 Tax=Ruminococcus RepID=D4L669_9FIRM
L3_122_000M1_scaffold_289_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35004..35990)
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
tRNA-dihydrouridine synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L668_9FIRM
tRNA-U20-dihydrouridine synthase
L3_122_000M1_scaffold_289_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36000..36536)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0G0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81716.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
Displaying items 1-30 of 54 in total

View Taxonomy