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L3_122_000M1_scaffold_304

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_304_1
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..392
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:EGN38150.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_122_000M1_scaffold_304_2
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(282..5873)
DNA (5592bp) protein (1864aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=F7JD84_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82468.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
alpha-N-acetylglucosaminidase family protein
L3_122_000M1_scaffold_304_3
unknown

Not on your lists

comp(5928..6161)
DNA (234bp) protein (78aa)

This feature has no annotations

L3_122_000M1_scaffold_304_4
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6221..6994)
DNA (774bp) protein (258aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase n=5 Tax=Clostridiales RepID=A5KKN6_9FIRM
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000313|EMBL:CCZ25966.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_122_000M1_scaffold_304_5
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7118..7513)
DNA (396bp) protein (132aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25967.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ArsR family transcriptional regulator
L3_122_000M1_scaffold_304_6
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7602..8423)
DNA (822bp) protein (274aa)
RNA polymerase sigma factor n=5 Tax=Clostridiales RepID=A5KKN8_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_122_000M1_scaffold_304_7
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8489..10462)
DNA (1974bp) protein (658aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=4 Tax=Lachnospiraceae RepID=A5KKN9_9FIRM
L3_122_000M1_scaffold_304_8
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10526..11284)
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=4 Tax=Lachnospiraceae RepID=A5KKP0_9FIRM
L3_122_000M1_scaffold_304_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11557..12066)
DNA (510bp) protein (170aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A5KKP1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25983.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_122_000M1_scaffold_304_10
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12213..12770)
DNA (558bp) protein (186aa)
Ribosomal subunit interface protein n=5 Tax=Clostridiales RepID=A5KKP2_9FIRM
Ribosomal subunit interface protein {ECO:0000313|EMBL:EFV19392.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
ribosomal subunit interface protein
L3_122_000M1_scaffold_304_11
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12924..14750)
DNA (1827bp) protein (609aa)
GTP-binding protein TypA/BipA n=4 Tax=Clostridiales RepID=E5XH00_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:CCZ25985.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
GTP-binding protein TypA/BipA
L3_122_000M1_scaffold_304_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15000..15629
DNA (630bp) protein (210aa)
Single-strand binding family protein n=5 Tax=Clostridiales RepID=A5KKP4_9FIRM
Single-strand binding family protein {ECO:0000313|EMBL:EDK24995.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Single-stranded DNA-binding protein
L3_122_000M1_scaffold_304_13
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15725..16378)
DNA (654bp) protein (218aa)
YigZ family protein n=2 Tax=Lachnospiraceae RepID=A5KKP5_9FIRM
YigZ family protein {ECO:0000313|EMBL:EDK24996.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
conserved hypothetical protein TIGR00257
L3_122_000M1_scaffold_304_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16599..19151
DNA (2553bp) protein (851aa)
penicillin-binding protein, 1A family (EC:2.4.1.- 3.4.-.-)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5QBK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25988.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_122_000M1_scaffold_304_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19347..20693)
DNA (1347bp) protein (449aa)
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein n=5 Tax=Clostridiales RepID=A5KKP7_9FIRM
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein {ECO:0000313|EMBL:EDK24998.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Na+/H+-dicarboxylate symporters
L3_122_000M1_scaffold_304_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21050..21913)
DNA (864bp) protein (288aa)
Transcriptional regulator, DeoR family n=3 Tax=Clostridiales RepID=A5KKP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25610.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Transcriptional regulators of sugar metabolism
L3_122_000M1_scaffold_304_17
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21985..22977)
DNA (993bp) protein (331aa)
Oxidoreductase, aldo/keto reductase family protein n=4 Tax=Lachnospiraceae RepID=A5KKP9_9FIRM
Aldo/keto reductase {ECO:0000313|EMBL:EFV19491.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
L3_122_000M1_scaffold_304_18
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23041..24009)
DNA (969bp) protein (323aa)
Kinase, PfkB family n=5 Tax=Clostridiales RepID=A5KKQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25608.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Sugar kinases, ribokinase family
L3_122_000M1_scaffold_304_19
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24002..24841)
DNA (840bp) protein (280aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Ketose-bisphosphate aldolase n=4 Tax=Lachnospiraceae RepID=A5KKQ1_9FIRM
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:EFV19489.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_122_000M1_scaffold_304_20
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24926..25981)
DNA (1056bp) protein (352aa)
Alcohol dehydrogenase zinc-binding domain-containing protein n=5 Tax=Clostridiales RepID=E5XGZ0_9FIRM
Alcohol dehydrogenase zinc-binding domain-containing protein {ECO:0000313|EMBL:EFV19488.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Threonine dehydrogenase and related Zn-dependent dehydrogenases
L3_122_000M1_scaffold_304_21
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26074..27474)
DNA (1401bp) protein (467aa)
Major facilitator superfamily transporter MFS_1 n=4 Tax=Clostridiales RepID=E5XGY9_9FIRM
Major facilitator superfamily transporter MFS_1 {ECO:0000313|EMBL:EFV19487.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Sugar phosphate permease
L3_122_000M1_scaffold_304_22
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27526..28212)
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5QH24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25604.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Pentose-5-phosphate-3-epimerase
L3_122_000M1_scaffold_304_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28230..29336)
DNA (1107bp) protein (369aa)
GroES-like protein n=4 Tax=Clostridiales RepID=A5KKQ5_9FIRM
GroES-like protein {ECO:0000313|EMBL:EDK25006.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Threonine dehydrogenase and related Zn-dependent dehydrogenases
L3_122_000M1_scaffold_304_24
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29742..30686)
DNA (945bp) protein (315aa)
glucokinase (EC:2.7.1.2)
ROK family protein n=4 Tax=Clostridiales RepID=A5KKQ6_9FIRM
Glucokinase {ECO:0000313|EMBL:EFV19484.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_122_000M1_scaffold_304_25
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30712..31641)
DNA (930bp) protein (310aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Hpr(Ser) kinase/phosphatase (EC:2.7.1.- 2.7.4.- 2.7.11.-)
HPr kinase/phosphorylase n=5 Tax=Clostridiales RepID=A5KKQ7_9FIRM
L3_122_000M1_scaffold_304_26
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31731..33584)
DNA (1854bp) protein (618aa)
UvrABC system protein C n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AXN0_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
excinuclease ABC, C subunit
L3_122_000M1_scaffold_304_27
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33658..34176)
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5QH21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25599.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
6-O-methylguanine DNA methyltransferase
L3_122_000M1_scaffold_304_28
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34320..36347)
DNA (2028bp) protein (676aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=3 Tax=Clostridiales RepID=A5KKR0_9FIRM
L3_122_000M1_scaffold_304_29
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36556..38025
DNA (1470bp) protein (490aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKR1_9FIRM
ATP-dependent Zn protease {ECO:0000313|EMBL:EFV19479.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_122_000M1_scaffold_304_30
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38117..39052)
DNA (936bp) protein (312aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
tRNA-dihydrouridine synthase n=2 Tax=Clostridiales RepID=F3AXN4_9FIRM
tRNA-U20a,U20b-dihydrouridine synthase
Displaying items 1-30 of 51 in total

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