ggKbase home page

L3_122_000M1_scaffold_310

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_310_1
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..3352
DNA (3351bp) protein (1117aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
DNA-directed RNA polymerase subunit beta' n=2 Tax=Alistipes RepID=I3YMY6_ALIFI
L3_122_000M1_scaffold_310_2
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3688..4689)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00035C380C
Uncharacterized protein {ECO:0000313|EMBL:EHB92633.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein
L3_122_000M1_scaffold_310_3
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4723..5415)
DNA (693bp) protein (231aa)
nitrogen-fixing protein NifU n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003650CC6
Uncharacterized protein {ECO:0000313|EMBL:EHB92634.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
hypothetical protein
L3_122_000M1_scaffold_310_4

Not on your lists

5550..6053
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E433B4
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:EKC49899.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Acetyltransferase (GNAT) family.
L3_122_000M1_scaffold_310_5
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6330..6989
DNA (660bp) protein (220aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 (EC:3.1.3.5)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00030450CB
HAD hydrolase family IA variant 1 {ECO:0000313|EMBL:CDE63224.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
L3_122_000M1_scaffold_310_6
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7008..9263)
DNA (2256bp) protein (752aa)
hypothetical protein, partial n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00035CA7AD
sodium/proton antiporter
TrkA C-terminal domain protein {ECO:0000313|EMBL:EEU52980.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_122_000M1_scaffold_310_7
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9503..10273)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003683228
Uncharacterized protein {ECO:0000313|EMBL:EHP45372.1}; TaxID=742817 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter laneus YIT 12061.;"
sugar metabolism transcriptional regulator
L3_122_000M1_scaffold_310_8
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10648..12009
DNA (1362bp) protein (454aa)
sugar phosphate permease n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036BB011
Uncharacterized protein {ECO:0000313|EMBL:EHB91249.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
sugar phosphate permease
L3_122_000M1_scaffold_310_9
unknown

Not on your lists

comp(11828..12529)
DNA (702bp) protein (234aa)

This feature has no annotations

L3_122_000M1_scaffold_310_10
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12613..13623
DNA (1011bp) protein (337aa)
Inosine-uridine nucleoside N-ribohydrolase (EC:3.2.2.1)
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:CBK63547.1}; EC=3.2.2.1 {ECO:0000313|EMBL:CBK63547.1};; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F3044A
L3_122_000M1_scaffold_310_11
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13806..17033
DNA (3228bp) protein (1076aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003082EFD
TonB-dependent receptor {ECO:0000313|EMBL:GAE82820.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
SusC/RagA family TonB-linked outer membrane protein
L3_122_000M1_scaffold_310_12
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17038..18549
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00035D78B7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK64632.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_122_000M1_scaffold_310_13
unknown

Not on your lists

18554..19180
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037F2634
L3_122_000M1_scaffold_310_14
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19197..21149
DNA (1953bp) protein (651aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F0AE2F
Calcineurin-like phosphoesterase.
Calcineurin-like phosphoesterase {ECO:0000313|EMBL:CBK64634.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_122_000M1_scaffold_310_15
Medicago truncatula, Medicago, Fabales, rosids, Streptophyta, Viridiplantae

Not on your lists

21219..23582
DNA (2364bp) protein (788aa)
hypothetical protein n=1 Tax=Alistipes sp. JC136 RepID=UPI0002899F48
Transmembrane protein, putative {ECO:0000313|EMBL:AES68322.2}; Uncharacterized protein {ECO:0000313|EnsemblPlants:AES68322}; TaxID=3880 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago.;" source="Medicago truncatula (Barrel medic) (Medicago tribuloides).;"
hypothetical protein
L3_122_000M1_scaffold_310_16
unknown

Not on your lists

23626..25554
DNA (1929bp) protein (643aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037C911B
L3_122_000M1_scaffold_310_17
Bacteroides massiliensis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25639..26280)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031E8766
Uncharacterized protein {ECO:0000313|EMBL:EOS11668.1}; TaxID=1235788 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides massiliensis dnLKV3.;"
hypothetical protein
L3_122_000M1_scaffold_310_18
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26296..27672)
DNA (1377bp) protein (459aa)
multidrug transporter MatE n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037A7AF7
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBK64774.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_122_000M1_scaffold_310_19
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28137..29042
DNA (906bp) protein (302aa)
cysteine synthase (EC:2.5.1.47)
cysteine synthase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002D7E246
Cysteine synthase {ECO:0000313|EMBL:CCZ97647.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_122_000M1_scaffold_310_20
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29054..29962
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003085806
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDE65060.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
glycosyltransferase
L3_122_000M1_scaffold_310_21
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30006..32654
DNA (2649bp) protein (883aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002D2A51B
hypothetical protein
Uncharacterized protein involved in outer membrane biogenesis {ECO:0000313|EMBL:AFL78566.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_122_000M1_scaffold_310_22
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32726..33274)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002DC3E76
Uncharacterized protein {ECO:0000313|EMBL:CDE63711.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
L3_122_000M1_scaffold_310_23
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33373..34119
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00030DD450
Uncharacterized protein {ECO:0000313|EMBL:CDE63709.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
LuxR family transcriptional regulator
L3_122_000M1_scaffold_310_24
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34294..35262
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003752F47
Uncharacterized protein {ECO:0000313|EMBL:CCZ97454.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
hypothetical protein
L3_122_000M1_scaffold_310_25
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35271..36914
DNA (1644bp) protein (548aa)
Uncharacterized protein n=1 Tax=Alistipes sp. HGB5 RepID=E4MB42_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFR57833.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
hypothetical protein
L3_122_000M1_scaffold_310_26
Mucinivorans hirudinis, Mucinivorans, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37011..38087)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002ED37ED
MdsC protein
MdsC protein {ECO:0000313|EMBL:CDN30162.1}; TaxID=1433126 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Mucinivorans.;" source="Mucinivorans hirudinis.;"
L3_122_000M1_scaffold_310_27

Not on your lists

38226..39623
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00035C498B
Glycoside hydrolase family 109 protein {ECO:0000313|EMBL:CCO21057.1}; TaxID=433724 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="termite gut metagenome.;"
dehydrogenase
L3_122_000M1_scaffold_310_28
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39699..40226)
DNA (528bp) protein (176aa)
protease n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002FA2528
DJ-1/PfpI family protein {ECO:0000313|EMBL:EDS03875.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
protease I
L3_122_000M1_scaffold_310_29
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40561..42213)
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000301CA1B
Uncharacterized protein {ECO:0000313|EMBL:CCZ96555.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
hypothetical protein
L3_122_000M1_scaffold_310_30
Bacteroides sp. D2, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42429..44171)
DNA (1743bp) protein (581aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F0633B
Uncharacterized protein {ECO:0000313|EMBL:EFS31297.1}; TaxID=556259 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D2.;"
SusD family.
Displaying items 1-30 of 41 in total

View Taxonomy