ggKbase home page

L3_122_000M1_scaffold_380

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_380_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..208
DNA (207bp) protein (69aa)
IS66 family element Orf2 protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6Z6_9PORP
IS66 family element Orf2 protein {ECO:0000313|EMBL:CDD14894.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_122_000M1_scaffold_380_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(338..763)
DNA (426bp) protein (142aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AAU5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14896.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyl transferase family protein
L3_122_000M1_scaffold_380_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1510..1800
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6C4U3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14897.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_122_000M1_scaffold_380_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1918..2220)
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AAU8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88205.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_380_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2845..4968)
DNA (2124bp) protein (708aa)
Tetratricopeptide repeat protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X020_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDD14900.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_380_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5106..5438)
DNA (333bp) protein (111aa)
Biotin-requiring enzyme n=7 Tax=Parabacteroides RepID=A7AAV1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14901.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
pyruvate/oxaloacetate carboxyltransferase
L3_122_000M1_scaffold_380_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5463..7010)
DNA (1548bp) protein (516aa)
Carboxyl transferase domain protein n=3 Tax=Parabacteroides RepID=A7AAV2_9PORP
Carboxyl transferase domain protein {ECO:0000313|EMBL:EDN88209.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acetyl-CoA carboxylase, carboxyltransferase component
L3_122_000M1_scaffold_380_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7035..7592)
DNA (558bp) protein (186aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=3 Tax=Parabacteroides RepID=A7AAV3_9PORP
L3_122_000M1_scaffold_380_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7598..8038)
DNA (441bp) protein (147aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Putative Holliday junction resolvase n=3 Tax=Parabacteroides RepID=K5Z9P1_9PORP
Holliday junction resolvase-like protein
L3_122_000M1_scaffold_380_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8089..9486)
DNA (1398bp) protein (466aa)
Undecaprenyl-phosphate glucose phosphotransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X025_9PORP
Undecaprenyl-phosphate glucose phosphotransferase {ECO:0000313|EMBL:CDD14905.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyltransferase
L3_122_000M1_scaffold_380_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9583..10731)
DNA (1149bp) protein (383aa)
OmpA family protein n=3 Tax=Parabacteroides RepID=A7AAV6_9PORP
OmpA family protein {ECO:0000313|EMBL:EDN88213.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane protein OmpA
L3_122_000M1_scaffold_380_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10842..11993)
DNA (1152bp) protein (384aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
GDP-mannose 4,6-dehydratase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y924_9PORP
GDP-D-mannose dehydratase
L3_122_000M1_scaffold_380_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12052..13122)
DNA (1071bp) protein (357aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
GDP-L-fucose synthase n=3 Tax=Parabacteroides RepID=A7AAV8_9PORP
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
L3_122_000M1_scaffold_380_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13115..13999)
DNA (885bp) protein (295aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Glucose-1-phosphate thymidylyltransferase n=3 Tax=Parabacteroides RepID=A7AAV9_9PORP
glucose-1-phosphate thymidylyltransferase
L3_122_000M1_scaffold_380_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14092..14214
DNA (123bp) protein (41aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6BI17_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14910.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_122_000M1_scaffold_380_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14198..14776
DNA (579bp) protein (193aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AAW1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14911.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_380_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15014..16021)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y930_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14912.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_380_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16039..18741)
DNA (2703bp) protein (901aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZA99_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08115.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
TonB-dependent receptor plug
L3_122_000M1_scaffold_380_19
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18745..19638)
DNA (894bp) protein (298aa)
Sigma factor regulatory protein, FecR/PupR family n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B7G2_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EEC97639.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
anti-FecI sigma factor, FecR
L3_122_000M1_scaffold_380_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20313..21509
DNA (1197bp) protein (399aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=2 Tax=Parabacteroides merdae RepID=A7AAW5_9PORP
L3_122_000M1_scaffold_380_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21571..22974
DNA (1404bp) protein (468aa)
Chorismate binding enzyme n=2 Tax=Parabacteroides merdae RepID=A7AAW6_9PORP
Chorismate binding enzyme {ECO:0000313|EMBL:EDN88223.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anthranilate synthase component I
L3_122_000M1_scaffold_380_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23004..23573
DNA (570bp) protein (190aa)
Glutamine amidotransferase, class I n=3 Tax=Parabacteroides RepID=A7AAW7_9PORP
Glutamine amidotransferase, class I {ECO:0000313|EMBL:EDN88224.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anthranilate synthase component II
L3_122_000M1_scaffold_380_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23604..24608
DNA (1005bp) protein (335aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Anthranilate phosphoribosyltransferase n=2 Tax=Parabacteroides merdae RepID=A7AAW8_9PORP
anthranilate phosphoribosyltransferase
L3_122_000M1_scaffold_380_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24619..25428
DNA (810bp) protein (270aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|SAAS:SAAS00046689}; EC=4.1.1.48 {ECO:0000256|SAAS:SAAS00046705};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Indole-3-glycerol phosphate synthase n=3 Tax=Parabacteroides RepID=A7AAW9_9PORP
trpC; indole-3-glycerol-phosphate synthase
L3_122_000M1_scaffold_380_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25425..26090
DNA (666bp) protein (222aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
N-(5'-phosphoribosyl)anthranilate isomerase n=3 Tax=Parabacteroides RepID=A7AAX0_9PORP
N-(5'-phosphoribosyl) anthranilate isomerase
L3_122_000M1_scaffold_380_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26113..26883
DNA (771bp) protein (257aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WR54_9PORP
L3_122_000M1_scaffold_380_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28101..29294
DNA (1194bp) protein (398aa)
Saccharopine dehydrogenase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XBR7_9PORP
Saccharopine dehydrogenase {ECO:0000313|EMBL:CDD13821.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
saccharopine dehydrogenase
L3_122_000M1_scaffold_380_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29370..30386
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z9R4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13820.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
radical SAM protein
L3_122_000M1_scaffold_380_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30396..30854
DNA (459bp) protein (153aa)
Antioxidant, AhpC/TSA family n=2 Tax=Parabacteroides merdae RepID=A7ACC3_9PORP
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EDN87578.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
bacterioferritin co-migratory protein
L3_122_000M1_scaffold_380_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


30861..31904
DNA (1044bp) protein (348aa)
Protein RecA n=3 Tax=Parabacteroides RepID=A7ACC2_9PORP
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
recA; recombinase A
Displaying items 1-30 of 50 in total

View Taxonomy