ggKbase home page

L3_122_000M1_scaffold_412

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_412_1
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

138..1145
DNA (1008bp) protein (336aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
tRNA-dihydrouridine synthase n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VT45_9BACE
nifR3 family TIM-barrel protein
L3_122_000M1_scaffold_412_2
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1161..2141)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5W1P5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86707.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
phosphoesterase PA-phosphatase-like protein
L3_122_000M1_scaffold_412_3
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2132..3142)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V7Z8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86708.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
NAD-dependent epimerase/dehydratase
L3_122_000M1_scaffold_412_4
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3147..4049)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VFK2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86709.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
cation diffusion facilitator family transporter
L3_122_000M1_scaffold_412_5
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4198..6348
DNA (2151bp) protein (717aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
Ribonuclease R n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V8J7_9BACE
ribonuclease R
L3_122_000M1_scaffold_412_6
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6427..6558)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV89_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY96941.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
hypothetical protein
L3_122_000M1_scaffold_412_7
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6647..7552
DNA (906bp) protein (302aa)
Serine O-acetyltransferase (EC:2.3.1.30)
Putative serine O-acetyltransferase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV88_BACPM
Putative serine O-acetyltransferase {ECO:0000313|EMBL:EDY96940.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
L3_122_000M1_scaffold_412_8
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7773..8927)
DNA (1155bp) protein (385aa)
lactaldehyde reductase (EC:1.1.1.77)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V804_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86713.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_122_000M1_scaffold_412_9
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8961..9770)
DNA (810bp) protein (270aa)
rhamnulose-1-phosphate aldolase (EC:4.1.2.19)
Putative rhamnulose-1-phosphate aldolase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV86_BACPM
Putative rhamnulose-1-phosphate aldolase {ECO:0000313|EMBL:EDY96938.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
L3_122_000M1_scaffold_412_10
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9796..10806)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V8K1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86715.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L-rhamnose-proton symport protein (RhaT)
L3_122_000M1_scaffold_412_11
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10872..12125)
DNA (1254bp) protein (418aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
sugar isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV84_BACPM
L3_122_000M1_scaffold_412_12
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12132..13610)
DNA (1479bp) protein (493aa)
L-rhamnulokinase (EC:2.7.1.51 2.7.1.5)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5W1Q6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86717.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_122_000M1_scaffold_412_13
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13773..14666
DNA (894bp) protein (298aa)
Transcriptional regulator, AraC family n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV81_BACPM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDY96933.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
transcriptional regulator
L3_122_000M1_scaffold_412_14
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14752..18243)
DNA (3492bp) protein (1164aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VFL2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86719.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
alpha-L-rhamnosidase
L3_122_000M1_scaffold_412_15
Bacteroides massiliensis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18476..20032)
DNA (1557bp) protein (519aa)
Uncharacterized protein n=1 Tax=Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 RepID=U6RC36_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA52748.1}; TaxID=1121098 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM; 13223.;"
putative arylsulfatase precursor
L3_122_000M1_scaffold_412_16
Bacteroides massiliensis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20053..21693)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 RepID=U6R8D9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA52749.1}; TaxID=1121098 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM; 13223.;"
putative outer membrane protein
L3_122_000M1_scaffold_412_17
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21700..25005)
DNA (3306bp) protein (1102aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 RepID=U6R8L6_9BACE
TonB-linked outer membrane , SusC/RagA family protein {ECO:0000313|EMBL:KDS47879.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
putative outer membrane protein probably involved in nutrient binding
L3_122_000M1_scaffold_412_18
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25236..26240)
DNA (1005bp) protein (335aa)
Sigma factor regulatory protein, FecR/PupR family n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV76_BACPM
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDY96928.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
anti-sigma factor
L3_122_000M1_scaffold_412_19
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26307..26915)
DNA (609bp) protein (203aa)
RNA polymerase sigma-70 factor n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV75_BACPM
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDY96927.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
RNA polymerase ECF-type sigma factor
L3_122_000M1_scaffold_412_20
unknown

Not on your lists

27002..27199
DNA (198bp) protein (66aa)

This feature has no annotations

L3_122_000M1_scaffold_412_21
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27365..27685
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V8K5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86720.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_122_000M1_scaffold_412_22
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27712..28581
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VT57_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86721.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
Abortive infection protein
L3_122_000M1_scaffold_412_23
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28568..29182
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5W1Q9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86722.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_122_000M1_scaffold_412_24
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29199..29846
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V814_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86723.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_122_000M1_scaffold_412_25
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29861..30100
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VFL8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86724.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_122_000M1_scaffold_412_26
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30113..30322
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V8K8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86725.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
XRE family transcriptional regulator
L3_122_000M1_scaffold_412_27
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30498..31376
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VT61_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86726.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_122_000M1_scaffold_412_28
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31422..32630)
DNA (1209bp) protein (403aa)
ROK family protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV68_BACPM
ROK family protein {ECO:0000313|EMBL:EDY96920.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
xylose repressor
L3_122_000M1_scaffold_412_29
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32930..34012
DNA (1083bp) protein (361aa)
Cyclically-permuted mutarotase family protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV67_BACPM
Cyclically-permuted mutarotase family protein {ECO:0000313|EMBL:EDY96919.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
cyclically-permuted mutarotase family protein
L3_122_000M1_scaffold_412_30
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34104..35021
DNA (918bp) protein (306aa)
Dihydrodipicolinate synthetase family n=2 Tax=Bacteroides RepID=B5CV66_BACPM
Dihydrodipicolinate synthetase family {ECO:0000313|EMBL:EDY96918.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
putative N-acetylneuraminate lyase
Displaying items 1-30 of 41 in total

View Taxonomy