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L3_122_000M1_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_454_1
unknown

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1..69
DNA (69bp) protein (23aa)

This feature has no annotations

L3_122_000M1_scaffold_454_2
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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91..207
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=7 Tax=Alistipes RepID=D4IML2_9BACT
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
L3_122_000M1_scaffold_454_3
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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240..620
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003006A9D
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
SSU ribosomal protein S13P
L3_122_000M1_scaffold_454_4
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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636..1025
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F21EDB
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
30S ribosomal protein S11
L3_122_000M1_scaffold_454_5
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1079..1687
DNA (609bp) protein (203aa)
30S ribosomal protein S4 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002D29FC4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
30S ribosomal protein S4
L3_122_000M1_scaffold_454_6
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1709..2701
DNA (993bp) protein (331aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=3 Tax=root RepID=B0MSJ8_9BACT
L3_122_000M1_scaffold_454_7
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2704..3279
DNA (576bp) protein (192aa)
50S ribosomal protein L17 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F8FC1B
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
L3_122_000M1_scaffold_454_8
Sanguibacteroides justesenii, Sanguibacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3798..4598
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031CEF51
Transcriptional regulator {ECO:0000313|EMBL:KIO44619.1}; TaxID=1547597 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Sanguibacteroides.;" source="Sanguibacteroides justesenii.;"
hypothetical protein
L3_122_000M1_scaffold_454_9
Alistipes sp. CAG:435, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4694..6373)
DNA (1680bp) protein (560aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036EA0BE
Uncharacterized protein {ECO:0000313|EMBL:CDD15984.1}; TaxID=1262695 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:435.;"
hypothetical protein
L3_122_000M1_scaffold_454_10
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6942..8294
DNA (1353bp) protein (451aa)
multi antimicrobial extrusion protein MatE n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000364A9C4
Putative multidrug efflux pump VmrA {ECO:0000313|EMBL:CDE62930.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
multi antimicrobial extrusion protein MatE
L3_122_000M1_scaffold_454_11
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8368..8928)
DNA (561bp) protein (187aa)
ribosome recycling factor n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002D26AF2
ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_122_000M1_scaffold_454_12
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8948..9550)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002FECB32
Peroxiredoxin {ECO:0000313|EMBL:CCZ97297.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
Peroxiredoxin
L3_122_000M1_scaffold_454_13
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9578..10285)
DNA (708bp) protein (236aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
uridylate kinase (EC:2.7.4.22)
uridylate kinase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000316B71F
L3_122_000M1_scaffold_454_14
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10479..12356
DNA (1878bp) protein (626aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036CB86E
L3_122_000M1_scaffold_454_15
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12413..12856)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037301BD
Lipocalin family protein {ECO:0000313|EMBL:CDD25614.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
sugar nucleotide epimerase
L3_122_000M1_scaffold_454_16
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12976..13677)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031DF616
Uncharacterized protein {ECO:0000313|EMBL:EFR57769.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
hypothetical protein
L3_122_000M1_scaffold_454_17
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(13711..14757)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000381435C
Uncharacterized protein {ECO:0000313|EMBL:CDE63747.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
Calcineurin-like phosphoesterase.
L3_122_000M1_scaffold_454_18
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14808..15578)
DNA (771bp) protein (257aa)
Fe-S oxidoreductase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002EB57F9
Fe-S oxidoreductases {ECO:0000313|EMBL:CDC99767.1}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
Fe-S oxidoreductases
L3_122_000M1_scaffold_454_19
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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16207..17475
DNA (1269bp) protein (423aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EDS02836.1}; EC=2.6.1.- {ECO:0000313|EMBL:EDS02836.1};; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
8-amino-7-oxononanoate synthase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000316C377
7-keto-8-aminopelargonate synthetase-like enzyme
L3_122_000M1_scaffold_454_20
unknown

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17486..18274
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037D8462
L3_122_000M1_scaffold_454_21
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(18464..19555)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003721541
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK63364.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_122_000M1_scaffold_454_22
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19882..21465
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037CE4CB
N-acetyl-beta-hexosaminidase {ECO:0000313|EMBL:CCZ95702.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
N-acetyl-beta-hexosaminidase
L3_122_000M1_scaffold_454_23
unknown

Not on your lists

21565..22062
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002FFE50C
L3_122_000M1_scaffold_454_24
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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22551..22811
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5H9U1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHB91357.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
transposase
L3_122_000M1_scaffold_454_25
unknown

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comp(22957..23559)
DNA (603bp) protein (201aa)

This feature has no annotations

L3_122_000M1_scaffold_454_26
unknown

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comp(23575..23784)
DNA (210bp) protein (70aa)

This feature has no annotations

L3_122_000M1_scaffold_454_27
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24188..26686
DNA (2499bp) protein (833aa)
excinuclease ABC subunit A n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003183CAD
Putative excinuclease ABC, A subunit {ECO:0000313|EMBL:EDO61333.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Excinuclease ATPase subunit
L3_122_000M1_scaffold_454_28
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27372..28373
DNA (1002bp) protein (334aa)
sigma factor n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002FE5BE1
Fe2+-dicitrate sensor membrane protein
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:AFL77446.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_122_000M1_scaffold_454_29
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28502..32017
DNA (3516bp) protein (1172aa)
TonB-linked outer membrane protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003059501
SusC/RagA family TonB-linked outer membrane protein
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:AFL77448.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_122_000M1_scaffold_454_30
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32034..33806
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037D30E5
RagB/SusD family protein {ECO:0000313|EMBL:CCZ76253.1}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
RagB/SusD family protein
Displaying items 1-30 of 46 in total

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