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L3_122_000M1_scaffold_513

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_513_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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171..2588
DNA (2418bp) protein (806aa)
TonB-dependent receptor n=2 Tax=Parabacteroides merdae RepID=A7ABD7_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:EDN87887.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
TonB-dependent receptor
L3_122_000M1_scaffold_513_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2693..3235
DNA (543bp) protein (181aa)
RNA polymerase sigma-70 factor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X535_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14254.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase ECF-type sigma factor
L3_122_000M1_scaffold_513_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3565..4542
DNA (978bp) protein (326aa)
Sigma factor regulatory protein, FecR/PupR family n=2 Tax=Parabacteroides merdae RepID=A7ABE1_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN87891.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-sigma factor
L3_122_000M1_scaffold_513_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4816..8220
DNA (3405bp) protein (1135aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A1L4_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN17435.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000M1_scaffold_513_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8233..9933
DNA (1701bp) protein (567aa)
SusD family protein n=3 Tax=Parabacteroides merdae RepID=A7ABE3_9PORP
SusD family protein {ECO:0000313|EMBL:EDN87893.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_513_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10013..11407
DNA (1395bp) protein (465aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA n=2 Tax=Parabacteroides merdae RepID=A7ABE4_9PORP
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA {ECO:0000313|EMBL:EDN87894.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glucose-inhibited division protein A
L3_122_000M1_scaffold_513_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11448..13355
DNA (1908bp) protein (636aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7ABE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87895.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
L3_122_000M1_scaffold_513_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13372..15231
DNA (1860bp) protein (620aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZNW4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11901.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
pyridine nucleotide-disulfide oxidoreductase
L3_122_000M1_scaffold_513_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15352..16803
DNA (1452bp) protein (484aa)
Hydrolase, alpha/beta domain protein n=2 Tax=Parabacteroides merdae RepID=A7ABE7_9PORP
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EDN87897.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
peptidase S9
L3_122_000M1_scaffold_513_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16825..17658
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WL79_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11908.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative exported alpha-L-fucosidase protein
L3_122_000M1_scaffold_513_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17873..18121
DNA (249bp) protein (83aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7ABE9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87899.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase
L3_122_000M1_scaffold_513_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18239..22192
DNA (3954bp) protein (1318aa)
Divergent AAA domain protein n=2 Tax=Parabacteroides merdae RepID=A7ABF0_9PORP
Divergent AAA domain protein {ECO:0000313|EMBL:EDN87900.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATPase AAA
L3_122_000M1_scaffold_513_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22189..23349)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZNX4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17449.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000M1_scaffold_513_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23579..25945
DNA (2367bp) protein (789aa)
Efflux ABC transporter, permease protein n=2 Tax=Parabacteroides merdae RepID=A7ABF2_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN87902.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_513_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25979..28351
DNA (2373bp) protein (791aa)
Uncharacterized protein n=4 Tax=Parabacteroides merdae RepID=K6A157_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17451.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter permease
L3_122_000M1_scaffold_513_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28531..29211
DNA (681bp) protein (227aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5YTD1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17452.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter ATP-binding protein
L3_122_000M1_scaffold_513_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29334..31664
DNA (2331bp) protein (777aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ANY9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17453.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter permease
L3_122_000M1_scaffold_513_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31672..32523)
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AFS5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85981.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_513_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33115..34884)
DNA (1770bp) protein (590aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A1N3_9PORP
two-component system sensor histidine kinase
L3_122_000M1_scaffold_513_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35005..35691)
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=3 Tax=Parabacteroides RepID=A7AFS9_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD13705.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two-component system response regulator
L3_122_000M1_scaffold_513_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35796..36641)
DNA (846bp) protein (282aa)
Histidinol phosphate phosphatase HisJ family protein n=2 Tax=Parabacteroides merdae RepID=K6BD64_9PORP
Histidinol phosphate phosphatase HisJ family protein {ECO:0000313|EMBL:EKN17457.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
histidinol-phosphatase
L3_122_000M1_scaffold_513_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36785..37975)
DNA (1191bp) protein (397aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
Glycine C-acetyltransferase n=3 Tax=Parabacteroides RepID=A7AFT1_9PORP
L3_122_000M1_scaffold_513_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38015..38152)
DNA (138bp) protein (46aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZNY2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13379.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_122_000M1_scaffold_513_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38216..39169
DNA (954bp) protein (318aa)
NAD dependent epimerase/dehydratase family protein n=4 Tax=Parabacteroides RepID=A7AFT2_9PORP
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:CDD13380.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
epimerase/reductase
L3_122_000M1_scaffold_513_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39629..40621
DNA (993bp) protein (331aa)
Oxidoreductase aldo/keto reductase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y4R0_9PORP
Oxidoreductase aldo/keto reductase family protein {ECO:0000313|EMBL:CDD13382.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
oxidoreductase
L3_122_000M1_scaffold_513_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40662..43592
DNA (2931bp) protein (977aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPY9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13383.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_513_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(43598..44269)
DNA (672bp) protein (224aa)
TIGR02453 family protein n=3 Tax=Parabacteroides RepID=A7AFT6_9PORP
TIGR02453 family protein {ECO:0000313|EMBL:CDD13384.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_513_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44288..45157)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZNY7_9PORP
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDD13385.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
AraC family transcriptional regulator
L3_122_000M1_scaffold_513_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

45280..46458
DNA (1179bp) protein (393aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6A1P2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17465.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
major facilitator superfamily MFS_1
Displaying 29 items

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