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L3_122_000M1_scaffold_553

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_553_1
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

246..1985
DNA (1740bp) protein (580aa)
Probable cell surface protein (Leucine-rich repeat protein) n=1 Tax=Bacteroides sp. CAG:20 RepID=R5F2W3_9BACE
cell surface protein
Cell surface protein {ECO:0000313|EMBL:AHF12351.1}; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
L3_122_000M1_scaffold_553_2
unknown

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comp(2256..3905)
DNA (1650bp) protein (550aa)

This feature has no annotations

L3_122_000M1_scaffold_553_3
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4501..5103
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Bacteroidetes RepID=F3XRZ6_9FLAO
Holliday junction ATP-dependent DNA helicase ruvA
L3_122_000M1_scaffold_553_4
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5137..12798
DNA (7662bp) protein (2554aa)
Uncharacterized protein n=2 Tax=Bacteroidetes RepID=F3XRZ7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHG98833.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
hypothetical protein
L3_122_000M1_scaffold_553_5
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13113..14594)
DNA (1482bp) protein (494aa)
HDIG domain protein n=2 Tax=Bacteroidetes RepID=F3XRZ9_9FLAO
HDIG domain protein {ECO:0000313|EMBL:EHG98831.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
tRNA nucleotidyltransferase
L3_122_000M1_scaffold_553_6
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14668..15183
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=Bacteroidetes RepID=F3XS00_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHG98830.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
L3_122_000M1_scaffold_553_7
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15280..15462)
DNA (183bp) protein (61aa)
Uncharacterized protein n=2 Tax=Bacteroidetes RepID=F3XS01_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHG98829.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
hypothetical protein
L3_122_000M1_scaffold_553_8
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15795..17198)
DNA (1404bp) protein (468aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
Putative RIP metalloprotease RseP n=2 Tax=Bacteroidetes RepID=F3XS03_9FLAO
membrane-associated zinc metalloprotease
L3_122_000M1_scaffold_553_9
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17226..18410)
DNA (1185bp) protein (395aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Bacteroidetes RepID=F3XS04_9FLAO
1-deoxy-D-xylulose 5-phosphate reductoisomerase
L3_122_000M1_scaffold_553_10
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18407..18934)
DNA (528bp) protein (176aa)
Ribosome maturation factor RimM n=3 Tax=Bacteroidetes RepID=F3XS05_9FLAO
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
16S rRNA-processing protein RimM
L3_122_000M1_scaffold_553_11
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18931..20241)
DNA (1311bp) protein (437aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=3 Tax=Bacteroidetes RepID=F3XS06_9FLAO
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_122_000M1_scaffold_553_12
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20259..20879)
DNA (621bp) protein (207aa)
Uncharacterized protein n=3 Tax=Bacteroidetes RepID=F3XS07_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CCZ01173.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
hypothetical protein
L3_122_000M1_scaffold_553_13
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20880..21572)
DNA (693bp) protein (231aa)
Universal bacterial protein YeaZ n=3 Tax=Bacteroidetes RepID=F3XS08_9FLAO
Universal bacterial protein YeaZ {ECO:0000313|EMBL:CCZ01174.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
glycoprotease
L3_122_000M1_scaffold_553_14
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21659..22534
DNA (876bp) protein (292aa)
TIGR00255 family protein n=3 Tax=Bacteroidetes RepID=F3XS09_9FLAO
TIGR00255 family protein {ECO:0000313|EMBL:EHG98821.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
hypothetical protein
L3_122_000M1_scaffold_553_15
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22549..23115
DNA (567bp) protein (189aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=3 Tax=Bacteroidetes RepID=F3XS10_9FLAO
L3_122_000M1_scaffold_553_16
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23128..23346
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NWA2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCZ01177.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
L3_122_000M1_scaffold_553_17
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23343..23927
DNA (585bp) protein (195aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
Probable nicotinate-nucleotide adenylyltransferase n=3 Tax=Bacteroidetes RepID=F3XS12_9FLAO
nicotinate-nucleotide adenylyltransferase
L3_122_000M1_scaffold_553_18
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24040..25629)
DNA (1590bp) protein (530aa)
Alpha-L-fucosidase n=3 Tax=Bacteroidetes RepID=F3XS13_9FLAO
Alpha-L-fucosidase {ECO:0000313|EMBL:EHG98817.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
glycoside hydrolase family protein
L3_122_000M1_scaffold_553_19
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25746..25958)
DNA (213bp) protein (71aa)
Conserved domain protein n=2 Tax=Bacteroidetes RepID=F3XS14_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHG98816.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
L3_122_000M1_scaffold_553_20
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26064..27380)
DNA (1317bp) protein (439aa)
L-fucose:H+ symporter permease n=3 Tax=Bacteroidetes RepID=F3XS15_9FLAO
L-fucose:H+ symporter permease {ECO:0000313|EMBL:EHG98815.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
L-fucose transporter
L3_122_000M1_scaffold_553_21
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27417..27794)
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Bacteroidetes RepID=F3XS16_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHG98814.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
hypothetical protein
L3_122_000M1_scaffold_553_22
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27801..29189)
DNA (1389bp) protein (463aa)
Carbohydrate kinase, FGGY family protein n=2 Tax=Bacteroidetes RepID=F3XS17_9FLAO
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EHG98813.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
Carbohydrate kinase, FGGY
L3_122_000M1_scaffold_553_23
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29186..29821)
DNA (636bp) protein (212aa)
Class II Aldolase and Adducin domain protein n=3 Tax=Bacteroidetes RepID=F3XS18_9FLAO
Class II Aldolase and Adducin domain protein {ECO:0000313|EMBL:CCZ01183.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
fuculose phosphate aldolase
L3_122_000M1_scaffold_553_24
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29953..31725)
DNA (1773bp) protein (591aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
fucI; L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=2 Tax=Bacteroidetes RepID=F3XS19_9FLAO
L3_122_000M1_scaffold_553_25
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31884..32813
DNA (930bp) protein (310aa)
Transcriptional regulator AraC family n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NAP5_9BACT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ01185.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
AraC family transcriptional regulator
L3_122_000M1_scaffold_553_26
unknown

Not on your lists

comp(32749..32877)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_122_000M1_scaffold_553_27
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32946..34391
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NUY4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCZ01186.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
L3_122_000M1_scaffold_553_28
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34378..34857)
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Bacteroidetes RepID=F3XS22_9FLAO
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L3_122_000M1_scaffold_553_29
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34874..35974)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NBT8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCZ01188.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
Ompp1/FadL/TodX family transporter
L3_122_000M1_scaffold_553_30
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36099..39902)
DNA (3804bp) protein (1268aa)
Conserved domain protein n=2 Tax=Bacteroidetes RepID=F3XS24_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHG98806.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella clara YIT 11840.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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