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L3_122_000M1_scaffold_556

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_556_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(109..771)
DNA (663bp) protein (221aa)
H(+)-transporting ATP synthase, vacuolar type, subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6Q3_9FIRM
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_556_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(793..2166)
DNA (1374bp) protein (458aa)
Archaeal/vacuolar-type H+-ATPase subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain n=2 Tax=Ruminococcus RepID=D4L7A8_9FIRM
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2166..3932)
DNA (1767bp) protein (589aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Archaeal/vacuolar-type H+-ATPase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DY09_9FIRM
L3_122_000M1_scaffold_556_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3944..4267)
DNA (324bp) protein (108aa)
Archaeal/vacuolar-type H+-ATPase subunit F (EC:3.6.3.14)
Archaeal/vacuolar-type H+-ATPase subunit F {ECO:0000313|EMBL:CBL15504.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBL15504.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Archaeal/vacuolar-type H+-ATPase subunit F n=2 Tax=Ruminococcus RepID=D4L7A9_9FIRM
L3_122_000M1_scaffold_556_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4260..5231)
DNA (972bp) protein (324aa)
Archaeal/vacuolar-type H+-ATPase subunit C (EC:3.6.3.14)
Archaeal/vacuolar-type H+-ATPase subunit C {ECO:0000313|EMBL:CBL15505.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBL15505.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Archaeal/vacuolar-type H+-ATPase subunit C n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7B0_9FIRM
L3_122_000M1_scaffold_556_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5243..5824)
DNA (582bp) protein (194aa)
Archaeal/vacuolar-type H+-ATPase subunit E (EC:3.6.3.14)
V-type proton ATPase subunit E n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DU91_9FIRM
V-type proton ATPase subunit E {ECO:0000313|EMBL:CCX83810.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_556_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5866..6339)
DNA (474bp) protein (158aa)
ATP synthase subunit C. (EC:3.6.3.14)
ATP synthase subunit C {ECO:0000313|EMBL:CBL15506.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBL15506.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
ATP synthase subunit C n=3 Tax=root RepID=D4L7B1_9FIRM
L3_122_000M1_scaffold_556_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6336..8309)
DNA (1974bp) protein (658aa)
Archaeal/vacuolar-type H+-ATPase subunit I (EC:3.6.3.14)
Putative V-type sodium ATPase I subunit n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUG5_9FIRM
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_556_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8359..8670)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7B2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15507.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_10
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9168..9545)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MSN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF02823.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_556_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9640..10185
DNA (546bp) protein (182aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6P2_9FIRM
ybaK/ebsC protein
L3_122_000M1_scaffold_556_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10258..14295)
DNA (4038bp) protein (1346aa)
Cation/multidrug efflux pump n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7B5_9FIRM
Cation/multidrug efflux pump
Cation/multidrug efflux pump {ECO:0000313|EMBL:CBL15510.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14418..15032)
DNA (615bp) protein (205aa)
Transcriptional regulator n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7B6_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL15511.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15177..15647)
DNA (471bp) protein (157aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Protein-tyrosine-phosphatase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUG0_9FIRM
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:CCX83803.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_122_000M1_scaffold_556_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15644..15748)
DNA (105bp) protein (35aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E4V4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15513.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15799..16164)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83801.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_122_000M1_scaffold_556_17
unknown

Not on your lists

comp(16218..16454)
DNA (237bp) protein (79aa)

This feature has no annotations

L3_122_000M1_scaffold_556_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16673..16837
DNA (165bp) protein (55aa)
Sugar transferases involved in lipopolysaccharide synthesis n=2 Tax=Ruminococcus RepID=D4L7C0_9FIRM
Sugar transferases involved in lipopolysaccharide synthesis
Sugar transferases involved in lipopolysaccharide synthesis {ECO:0000313|EMBL:CBL15515.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16879..17301
DNA (423bp) protein (141aa)
Sugar transferases involved in lipopolysaccharide synthesis n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DXZ4_9FIRM
Sugar transferases involved in lipopolysaccharide synthesis {ECO:0000313|EMBL:CCX83799.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Sugar transferases involved in lipopolysaccharide synthesis
L3_122_000M1_scaffold_556_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17339..18352
DNA (1014bp) protein (338aa)
Glycosyltransferase group 1 family protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUF7_9FIRM
Glycosyltransferase group 1 family protein {ECO:0000313|EMBL:CCX83798.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Glycosyltransferase
L3_122_000M1_scaffold_556_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18411..19499
DNA (1089bp) protein (363aa)
Glycosyltransferase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7C3_9FIRM
Glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:CBL15518.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19505..19831
DNA (327bp) protein (109aa)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7C4_9FIRM
Glycosyltransferases involved in cell wall biogenesis
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CBL15519.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_23
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19881..21098)
DNA (1218bp) protein (406aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JR25_CELLD
transposase IS204/IS1001/IS1096/IS1165 family protein
Transposase IS204/IS1001/IS1096/IS1165 family protein {ECO:0000313|EMBL:ADZ83883.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_122_000M1_scaffold_556_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21296..21901)
DNA (606bp) protein (202aa)
Mn-containing catalase n=2 Tax=Ruminococcus RepID=D4L7C5_9FIRM
Mn-containing catalase
Mn-containing catalase {ECO:0000313|EMBL:CBL15520.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21852..23054)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4V5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83201.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
putative site-specific recombinase
L3_122_000M1_scaffold_556_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23244..24056
DNA (813bp) protein (271aa)
ABC-type amino acid transport/signal transduction systems periplasmic component/domain n=2 Tax=root RepID=R5DSF5_9FIRM
ABC-type amino acid transport/signal transduction systems periplasmic component/domain {ECO:0000313|EMBL:CCX83200.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
L3_122_000M1_scaffold_556_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24199..24849
DNA (651bp) protein (217aa)
Amino acid ABC transporter membrane protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSN6_9FIRM
Amino acid ABC transporter membrane protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CCX83198.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_122_000M1_scaffold_556_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24862..25659
DNA (798bp) protein (266aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBL15523.1}; EC=3.6.3.21 {ECO:0000313|EMBL:CBL15523.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7C8_9FIRM
L3_122_000M1_scaffold_556_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25831..26220
DNA (390bp) protein (130aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7C9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15524.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_122_000M1_scaffold_556_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26333..27616)
DNA (1284bp) protein (428aa)
Putative GTPases (G3E family) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSE4_9FIRM
Putative GTPases (G3E family) {ECO:0000313|EMBL:CCX83190.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Putative GTPases (G3E family)
Displaying items 1-30 of 49 in total

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