ggKbase home page

L3_122_000M1_scaffold_566

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_566_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

179..739
DNA (561bp) protein (187aa)
RNA polymerase sigma-70 factor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WTJ6_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD12680.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ECF-type sigma factor
L3_122_000M1_scaffold_566_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

977..1960
DNA (984bp) protein (328aa)
Sigma factor regulatory protein, FecR/PupR family n=2 Tax=Parabacteroides RepID=A7AHA0_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD12682.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
anti-sigma factor
L3_122_000M1_scaffold_566_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2078..5425
DNA (3348bp) protein (1116aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WTK2_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD12685.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_566_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5442..7280
DNA (1839bp) protein (613aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5YGU0_9PORP
SusD family protein {ECO:0000313|EMBL:CDD12687.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RagB/SusD domain-containing protein
L3_122_000M1_scaffold_566_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7396..9396
DNA (2001bp) protein (667aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AH97_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85714.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
xanthan lyase
L3_122_000M1_scaffold_566_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9448..12450
DNA (3003bp) protein (1001aa)
Tat (Twin-arginine translocation) pathway signal sequence n=2 Tax=Parabacteroides RepID=K5ZNG3_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CDD12692.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_566_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12457..14319
DNA (1863bp) protein (621aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AH95_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85712.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_566_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14403..14729)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X8N4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12696.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_122_000M1_scaffold_566_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14918..16891)
DNA (1974bp) protein (658aa)
Glycosyl hydrolase family 20, catalytic domain protein n=2 Tax=Parabacteroides merdae RepID=A7AH92_9PORP
Glycosyl hydrolase family 20, catalytic domain protein {ECO:0000313|EMBL:EDN85709.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative glycosyl hydrolase, beta-N-acetylhexosaminidase
L3_122_000M1_scaffold_566_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17037..17762
DNA (726bp) protein (242aa)
ThiF family protein n=4 Tax=Parabacteroides RepID=A7AH91_9PORP
ThiF family protein {ECO:0000313|EMBL:EDN85708.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ThiF family protein
L3_122_000M1_scaffold_566_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17826..18494
DNA (669bp) protein (223aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ABC transporter ATP-binding protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X665_9PORP
lipoprotein releasing system ATP-binding protein
L3_122_000M1_scaffold_566_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18551..19918
DNA (1368bp) protein (456aa)
Transporter n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZB06_9PORP
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Na+-dependent transporter
L3_122_000M1_scaffold_566_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20037..20807
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6AAW0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12798.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000M1_scaffold_566_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20811..21689)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YGT3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12797.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_122_000M1_scaffold_566_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21716..23470)
DNA (1755bp) protein (585aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6BET4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12796.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RagB/SusD domain-containing protein
L3_122_000M1_scaffold_566_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23490..26768)
DNA (3279bp) protein (1093aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WUQ8_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD13020.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor plug
L3_122_000M1_scaffold_566_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26874..27257)
DNA (384bp) protein (128aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AH84_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85701.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_566_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27235..28017)
DNA (783bp) protein (261aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AH83_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85700.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_566_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28537..28836
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K5YGS8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12792.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_122_000M1_scaffold_566_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28706..29503)
DNA (798bp) protein (266aa)
LytTr DNA-binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AH82_9PORP
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EDN85699.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transmembrane protein and transcriptional regulator
L3_122_000M1_scaffold_566_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29507..30268)
DNA (762bp) protein (254aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AH81_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13015.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_566_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30425..31939
DNA (1515bp) protein (505aa)
Tat pathway signal sequence domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X1M3_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CDD13014.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_566_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32039..32998
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WP63_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13013.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_122_000M1_scaffold_566_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33263..34048
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZAY9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12779.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
lipoprotein
L3_122_000M1_scaffold_566_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34149..34913
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AH76_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85693.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_122_000M1_scaffold_566_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34942..35952)
DNA (1011bp) protein (337aa)
NAD dependent epimerase/dehydratase family protein n=3 Tax=Parabacteroides RepID=A7AH75_9PORP
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:CDD13010.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
NAD-dependent epimerase
L3_122_000M1_scaffold_566_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35958..36158)
DNA (201bp) protein (67aa)
ABC transporter, ATP-binding protein n=7 Tax=Parabacteroides RepID=A7AH74_9PORP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN85691.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_122_000M1_scaffold_566_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36151..36912)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6A574_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13008.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metal ABC transporter ATP-binding protein
L3_122_000M1_scaffold_566_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36896..37801)
DNA (906bp) protein (302aa)
ABC transporter substrate-binding protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y3S5_9PORP
ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDD13007.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
zinc ABC transporter zinc-binding protein
L3_122_000M1_scaffold_566_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38054..39070)
DNA (1017bp) protein (339aa)
Peptidase, S41 family n=3 Tax=Parabacteroides RepID=A7AH72_9PORP
Peptidase, S41 family {ECO:0000313|EMBL:EDN85689.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
Displaying items 1-30 of 37 in total

View Taxonomy