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L3_122_000M1_scaffold_582

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_582_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(139..492)
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=4 Tax=Roseburia RepID=D4KN11_9FIRM
ribosomal protein L19, bacterial type
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_582_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(622..1338)
DNA (717bp) protein (239aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Roseburia intestinalis RepID=D4KZK1_9FIRM
L3_122_000M1_scaffold_582_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1335..1868)
DNA (534bp) protein (178aa)
Ribosome maturation factor RimM n=2 Tax=Roseburia intestinalis RepID=D4KN09_9FIRM
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_122_000M1_scaffold_582_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1966..2703)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B2W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57430.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Bacterial Ig-like domain (group 2).
L3_122_000M1_scaffold_582_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2784..3014)
DNA (231bp) protein (77aa)
UPF0109 protein ROI_10620 n=4 Tax=Roseburia RepID=D4KN07_9FIRM
RNA-binding protein (KH domain)
UPF0109 protein ROSINTL182_08457 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_122_000M1_scaffold_582_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3033..3278)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Roseburia RepID=D4KN06_9FIRM
SSU ribosomal protein S16P
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_582_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3314..4660)
DNA (1347bp) protein (449aa)
Signal recognition particle protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMV0_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
signal recognition particle protein
L3_122_000M1_scaffold_582_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4661..5005)
DNA (345bp) protein (115aa)
UPF0122 protein ROSINTL182_08460 n=2 Tax=Roseburia RepID=C7GEV8_9FIRM
UPF0122 protein ROSINTL182_08460 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_122_000M1_scaffold_582_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5231..5623
DNA (393bp) protein (131aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GEV9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57423.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_582_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5776..6987)
DNA (1212bp) protein (404aa)
threonine dehydratase, medium form (EC:4.3.1.19)
Threonine dehydratase, medium form {ECO:0000313|EMBL:CBL12782.1}; EC=4.3.1.19 {ECO:0000313|EMBL:CBL12782.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Threonine dehydratase, medium form n=2 Tax=Roseburia RepID=D4KZJ2_9FIRM
L3_122_000M1_scaffold_582_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7008..7952)
DNA (945bp) protein (315aa)
Signal recognition particle receptor FtsY n=4 Tax=Roseburia RepID=D4KN01_9FIRM
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_122_000M1_scaffold_582_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7983..11543)
DNA (3561bp) protein (1187aa)
Chromosome partition protein Smc n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KN00_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
condensin subunit Smc
L3_122_000M1_scaffold_582_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11580..12266)
DNA (687bp) protein (229aa)
RNAse III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribonuclease 3 n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZI9_9FIRM
L3_122_000M1_scaffold_582_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12667..13707)
DNA (1041bp) protein (347aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Phosphate acyltransferase n=3 Tax=Roseburia RepID=D4KZI6_9FIRM
phosphate:acyl-[acyl carrier protein] acyltransferase
L3_122_000M1_scaffold_582_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13821..14543)
DNA (723bp) protein (241aa)
Predicted integral membrane protein n=3 Tax=Roseburia RepID=D4KZI5_9FIRM
Predicted integral membrane protein
Predicted integral membrane protein {ECO:0000313|EMBL:CDA57414.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_582_16
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14706..14885)
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=6 Tax=Roseburia RepID=D4KMZ5_9FIRM
ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_122_000M1_scaffold_582_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14890..15414)
DNA (525bp) protein (175aa)
Putative ACR, COG1399 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEW9_9FIRM
Putative ACR, COG1399 {ECO:0000313|EMBL:EEU99651.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
putative Zn-finger-like protein
L3_122_000M1_scaffold_582_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15577..16767)
DNA (1191bp) protein (397aa)
acetate kinase (EC:2.7.2.1)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020, ECO:0000313|EMBL:CBL12774.1}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020, ECO:0000313|EMBL:CBL12774.1};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Acetate kinase n=2 Tax=Roseburia intestinalis RepID=D4KMZ4_9FIRM
L3_122_000M1_scaffold_582_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17113..18429
DNA (1317bp) protein (439aa)
UPF0348 protein RO1_22660 n=2 Tax=Roseburia RepID=R6B2T5_9FIRM
UPF0348 protein BN484_00835 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted nucleotidyltransferase
L3_122_000M1_scaffold_582_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18430..19608)
DNA (1179bp) protein (393aa)
AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) (EC:2.1.2.3 3.5.4.10)
AICAR transformylase/IMP cyclohydrolase PurH (Only IMP cyclohydrolase domain in Aful) {ECO:0000313|EMBL:CBL12770.1}; EC=2.1.2.3 {ECO:0000313|EMBL:CBL12770.1};; EC=3.5.4.10 {ECO:0000313|EMBL:CBL12770.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
AICAR transformylase/IMP cyclohydrolase PurH (Only IMP cyclohydrolase domain in Aful) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZI0_9FIRM
L3_122_000M1_scaffold_582_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19683..20396)
DNA (714bp) protein (238aa)
IMP cyclohydrolase-like protein n=3 Tax=Roseburia RepID=D4KZH9_9FIRM
IMP cyclohydrolase-like protein.
IMP cyclohydrolase-like protein {ECO:0000313|EMBL:CBL08243.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_122_000M1_scaffold_582_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20604..21824)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BEA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57406.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_122_000M1_scaffold_582_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21846..23210)
DNA (1365bp) protein (455aa)
UPF0210 protein ROI_10420 n=4 Tax=Roseburia RepID=D4KMY9_9FIRM
hypothetical protein
UPF0210 protein BN484_00831 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_582_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23225..23509)
DNA (285bp) protein (95aa)
UPF0237 protein ROI_10410 n=4 Tax=Roseburia RepID=D4KMY8_9FIRM
ACT domain-containing protein
UPF0237 protein BN484_00830 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_122_000M1_scaffold_582_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23715..24512)
DNA (798bp) protein (266aa)
Metal-dependent hydrolases of the beta-lactamase superfamily I n=2 Tax=Roseburia RepID=D4KZH5_9FIRM
Metal-dependent hydrolases of the beta-lactamase superfamily I
Metal-dependent hydrolases of the beta-lactamase superfamily I {ECO:0000313|EMBL:CBL12765.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_122_000M1_scaffold_582_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24517..26904)
DNA (2388bp) protein (796aa)
Actin-like ATPase involved in cell division n=3 Tax=Roseburia RepID=D4KZH4_9FIRM
Actin-like ATPase involved in cell division {ECO:0000313|EMBL:CDA57402.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Actin-like ATPase involved in cell division
L3_122_000M1_scaffold_582_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26917..27672)
DNA (756bp) protein (252aa)
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376, ECO:0000313|EMBL:CBL08237.1}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376, ECO:0000313|EMBL:CBL08237.1};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Dephospho-CoA kinase n=2 Tax=Roseburia intestinalis RepID=D4KMY5_9FIRM
L3_122_000M1_scaffold_582_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27614..30394)
DNA (2781bp) protein (927aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:EEU99616.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEU99616.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DNA polymerase I (EC:2.7.7.7)
DNA-directed DNA polymerase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEY2_9FIRM
L3_122_000M1_scaffold_582_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30416..32206)
DNA (1791bp) protein (597aa)
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CBL12761.1}; EC=3.4.11.9 {ECO:0000313|EMBL:CBL12761.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Xaa-Pro aminopeptidase n=3 Tax=Roseburia RepID=D4KZH1_9FIRM
L3_122_000M1_scaffold_582_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32254..32718)
DNA (465bp) protein (155aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=4 Tax=Roseburia RepID=C7GEY4_9FIRM
conserved hypothetical protein TIGR00051
Uncharacterized protein {ECO:0000313|EMBL:CDA57398.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Displaying items 1-30 of 39 in total

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