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L3_122_000M1_scaffold_1389

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_1389_1
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CAN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA73643.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L3_122_000M1_scaffold_1389_2
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(143..448)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus 8 RepID=E9SFB3_RUMAL
Uncharacterized protein {ECO:0000313|EMBL:EGC02032.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
L3_122_000M1_scaffold_1389_3
unknown

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comp(420..626)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_122_000M1_scaffold_1389_4
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(629..874)
DNA (246bp) protein (82aa)
Conserved domain protein n=1 Tax=Ruminococcus albus 8 RepID=E9SFB5_RUMAL
Conserved domain protein {ECO:0000313|EMBL:EGC02030.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
hypothetical protein
L3_122_000M1_scaffold_1389_5
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1234..2196)
DNA (963bp) protein (321aa)
Conserved domain protein (Fragment) n=1 Tax=Ruminococcus albus 8 RepID=E9SEG6_RUMAL
Conserved domain protein {ECO:0000313|EMBL:EGC02305.1}; Flags: Fragment;; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
hypothetical protein
L3_122_000M1_scaffold_1389_6
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2308..2598)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus 8 RepID=E9SEG7_RUMAL
Uncharacterized protein {ECO:0000313|EMBL:EGC02316.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
L3_122_000M1_scaffold_1389_7
unknown

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comp(2736..2957)
DNA (222bp) protein (74aa)

This feature has no annotations

L3_122_000M1_scaffold_1389_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3147..4814)
DNA (1668bp) protein (556aa)
AMP-binding enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO06010.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_122_000M1_scaffold_1389_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4836..5567)
DNA (732bp) protein (244aa)
HAD-superfamily hydrolase subfamily IA variant 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGP8_9FIRM
HAD-superfamily hydrolase subfamily IA variant 3 {ECO:0000313|EMBL:CDC67016.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_1389_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5827..6384)
DNA (558bp) protein (186aa)
Putative manganese efflux pump MntP n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8D8_9FIRM
hypothetical protein
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_1389_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6643..7785)
DNA (1143bp) protein (381aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0T1_9FIRM
L3_122_000M1_scaffold_1389_12
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7799..8893)
DNA (1095bp) protein (365aa)
Calcineurin-like phosphoesterase. (EC:3.1.3.16)
Calcineurin-like phosphoesterase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C7V6_9FIRM
Calcineurin-like phosphoesterase {ECO:0000313|EMBL:CDA71590.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L3_122_000M1_scaffold_1389_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8893..9276)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67019.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_1389_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9266..10387)
DNA (1122bp) protein (374aa)
Acyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4C5_9FIRM
Acyltransferase {ECO:0000313|EMBL:CDC67020.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_1389_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10456..11508)
DNA (1053bp) protein (351aa)
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGQ3_9FIRM
L3_122_000M1_scaffold_1389_16
unknown

Not on your lists

comp(11852..12022)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_122_000M1_scaffold_1389_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12082..13164
DNA (1083bp) protein (361aa)
asd; Aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8E2_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDC67022.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_1389_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13201..14091
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
dapA; Dihydrodipicolinate synthase (EC:4.3.3.7)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0T5_9FIRM
L3_122_000M1_scaffold_1389_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14243..15001
DNA (759bp) protein (253aa)
dapB; Dihydrodipicolinate reductase (EC:1.17.1.8)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBH6_9FIRM
L3_122_000M1_scaffold_1389_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15144..17354)
DNA (2211bp) protein (737aa)
Transglutaminase-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4C8_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:CDC67025.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
transglutaminase domain-containing protein
L3_122_000M1_scaffold_1389_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17367..18527)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGQ7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05999.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_1389_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18541..19479)
DNA (939bp) protein (313aa)
moxR; MoxR-like ATPase (EC:3.6.3.-)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8E4_9FIRM
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:CDC67027.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_1389_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19448..20719)
DNA (1272bp) protein (424aa)
rumA2; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCO05997.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCO05997.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0T8_9FIRM
L3_122_000M1_scaffold_1389_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22052..22342)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CI59_9FIRM
cas2; CRISPR-associated protein Cas2
L3_122_000M1_scaffold_1389_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22354..23376)
DNA (1023bp) protein (341aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2X7_9FIRM
cas1; CRISPR-associated endonuclease Cas1
Displaying 25 items

View Taxonomy