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L3_122_000M1_scaffold_1633

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_1633_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..103
DNA (102bp) protein (34aa)
Mannan endo-1 4-beta-mannosidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAH0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04303.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_1633_2
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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366..761
DNA (396bp) protein (132aa)
GtrA-like protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AIK6_9CLOT
GtrA-like protein {ECO:0000313|EMBL:EFC98332.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
L3_122_000M1_scaffold_1633_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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772..1491
DNA (720bp) protein (240aa)
Putative dolichol-phosphate mannosyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1X2_9FIRM
Putative dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:CDD34916.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
putative glycosyl transferase protein
L3_122_000M1_scaffold_1633_4
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1672..3057
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L5W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY74530.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
hypothetical protein
L3_122_000M1_scaffold_1633_5
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3020..4630
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L5W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY74530.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
hypothetical protein
L3_122_000M1_scaffold_1633_6
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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4627..5943
DNA (1317bp) protein (439aa)
Mannose-1-phosphate guanylyltransferase (EC:5.3.1.8)
Uncharacterized protein n=17 Tax=Enterococcus faecium RepID=L2K5B1_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ERT50164.1}; TaxID=1391465 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 10/96A.;"
L3_122_000M1_scaffold_1633_7
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5963..7015
DNA (1053bp) protein (351aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSB4_9FIRM
L3_122_000M1_scaffold_1633_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7029..7964
DNA (936bp) protein (312aa)
gmd1; GDP-mannose 4,6-dehydratase Gmd1 (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSB1_9FIRM
GDP-mannose 4,6-dehydratase {ECO:0000313|EMBL:EHL71914.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_122_000M1_scaffold_1633_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8018..9433)
DNA (1416bp) protein (472aa)
GDSL-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA92_9FIRM
GDSL-like protein {ECO:0000313|EMBL:CDC66599.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Carbohydrate Esterase Family 2 protein
L3_122_000M1_scaffold_1633_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9576..11534)
DNA (1959bp) protein (653aa)
Pullulanase, type I (Carbohydrate-Binding Module Family 48 protein / Glycoside Hydrolase Family 13 protein) {ECO:0000313|EMBL:CCO04299.1}; EC=3.2.1.41 {ECO:0000313|EMBL:CCO04299.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
pulA; pullulanase, type I (Carbohydrate-Binding Module Family 48 protein / Glycoside Hydrolase Family 13 protein) (EC:3.2.1.41)
Pullulanase type I n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T336_9FIRM
L3_122_000M1_scaffold_1633_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11578..12450)
DNA (873bp) protein (291aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350, ECO:0000313|EMBL:CCO04298.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Phosphatidylserine decarboxylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFF7_9FIRM
L3_122_000M1_scaffold_1633_12
unknown

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comp(12437..12541)
DNA (105bp) protein (35aa)

This feature has no annotations

L3_122_000M1_scaffold_1633_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12558..13187)
DNA (630bp) protein (210aa)
pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase (EC:2.7.8.8)
CDP-alcohol phosphatidyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U734_9FIRM
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:CDC66602.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_1633_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13202..14293)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66603.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical membrane protein
L3_122_000M1_scaffold_1633_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14353..15315)
DNA (963bp) protein (321aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA98_9FIRM
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000313|EMBL:CDC66604.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_122_000M1_scaffold_1633_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15522..16496
DNA (975bp) protein (325aa)
birA; Bifunctional protein birA (EC:6.3.4.15)
Biotin/acetyl-CoA-carboxylase ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T341_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_1633_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16813..17289
DNA (477bp) protein (159aa)
putative iron hydrogenase, NADH dehydrogenase (EC:1.18.1.-)
NADH dehydrogenase (Ubiquinone) 24 kDa subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFG0_9FIRM
NADH dehydrogenase (Ubiquinone) 24 kDa subunit {ECO:0000313|EMBL:CDC66606.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_1633_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17291..19183
DNA (1893bp) protein (631aa)
putative iron hydrogenase, electron-transfer subunit (EC:1.6.5.3)
NADH dehydrogenase (Quinone) n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U737_9FIRM
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:CDC66607.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_1633_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19207..20871
DNA (1665bp) protein (555aa)
Iron hydrogenase I {ECO:0000313|EMBL:CCO04291.1}; EC=1.12.7.2 {ECO:0000313|EMBL:CCO04291.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Iron hydrogenase I (EC:1.12.7.2)
Hydrogenase Fe-only n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZK6_9FIRM
Displaying 19 items

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