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L3_122_000M1_scaffold_89

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Displaying items 1-30 of 91 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_89_1
unknown

Not on your lists

114..773
DNA (660bp) protein (220aa)

This feature has no annotations

L3_122_000M1_scaffold_89_2
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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786..3842
DNA (3057bp) protein (1019aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BT20_9CLOT
Type I deoxyribonuclease HsdR {ECO:0000313|EMBL:EWM54093.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
50S ribosomal protein L7/L12
L3_122_000M1_scaffold_89_3
R_RIF_OD1_06_38_12b, RIF-OD1-6, Parcubacteria, Bacteria

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3876..5066
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L6X3_FRAAD id=5103072 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_38_12b_curated
L3_122_000M1_scaffold_89_4
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5328..5978
DNA (651bp) protein (217aa)
Resolvase, N-terminal domain protein n=1 Tax=Ruminococcus albus 8 RepID=E9SEW1_RUMAL
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EGC02170.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_122_000M1_scaffold_89_5
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6132..6311
DNA (180bp) protein (60aa)
Site-specific recombinase, phage integrase family n=1 Tax=Ruminococcus albus 8 RepID=E9S8F2_RUMAL
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EGC04447.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
L3_122_000M1_scaffold_89_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6584..7912)
DNA (1329bp) protein (443aa)
Putative efflux protein MATE family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1Y2_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDC67448.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
multidrug resistance protein, MATE family, drug/sodium antiporter
L3_122_000M1_scaffold_89_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8161..10908
DNA (2748bp) protein (916aa)
ATP-dependent nuclease subunit B-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9H6_9FIRM
ATP-dependent nuclease subunit B-like protein {ECO:0000313|EMBL:CDC67447.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_89_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10905..14153
DNA (3249bp) protein (1083aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP-dependent exonuclase V beta subunit helicase and exonuclease domain-containing n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THW3_9FIRM
hypothetical protein
L3_122_000M1_scaffold_89_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14322..16262
DNA (1941bp) protein (647aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5D6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO04732.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
conserved hypothetical protein
L3_122_000M1_scaffold_89_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16293..16643
DNA (351bp) protein (117aa)
Hpt domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCL7_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04733.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16853..18181)
DNA (1329bp) protein (443aa)
Putative serine esterase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1X6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04734.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18193..19173)
DNA (981bp) protein (327aa)
DNA replication protein DnaC n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9G9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04735.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19187..20227)
DNA (1041bp) protein (347aa)
DnaD domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THW0_9FIRM
DnaD domain protein
DnaD domain protein {ECO:0000313|EMBL:CCO04736.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20370..20813
DNA (444bp) protein (148aa)
Acetyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5D1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04737.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20803..21873)
DNA (1071bp) protein (357aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCL0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04738.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22011..22130)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1W9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67438.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_89_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22330..22923)
DNA (594bp) protein (198aa)
PetM family of cytochrome b6f complex subunit 7 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9G4_9FIRM
PetM family of cytochrome b6f complex subunit 7 {ECO:0000313|EMBL:CDC67437.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_89_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23153..24271
DNA (1119bp) protein (373aa)
Methionine synthase vitamin-B12 independent n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THV6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04740.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_19
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24706..26289
DNA (1584bp) protein (528aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GXK0_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDE31830.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
response regulator receiver protein
L3_122_000M1_scaffold_89_20
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26291..28045
DNA (1755bp) protein (585aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GWP8_9FIRM
multi-sensor signal transduction histidine kinase
L3_122_000M1_scaffold_89_21
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28029..28898
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H0U3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE31812.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L3_122_000M1_scaffold_89_22
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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28909..29895
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D636_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75618.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
D-galactose-binding periplasmic proteinprecursor
L3_122_000M1_scaffold_89_23
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30045..31472
DNA (1428bp) protein (476aa)
Glycoside/pentoside/hexuronide transporter n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FEZ8_9FIRM
Glycoside/pentoside/hexuronide transporter {ECO:0000313|EMBL:CDE13420.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_122_000M1_scaffold_89_24
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31469..32758
DNA (1290bp) protein (430aa)
galK; Galactokinase (EC:2.7.1.6)
GHMP kinase N-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FDP1_9FIRM
GHMP kinase N-terminal domain protein {ECO:0000313|EMBL:CDE13419.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
L3_122_000M1_scaffold_89_25
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32791..33843
DNA (1053bp) protein (351aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Galactose mutarotase and related enzymes (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FFY8_9FIRM
L3_122_000M1_scaffold_89_26
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33930..35429
DNA (1500bp) protein (500aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10 2.7.7.12)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FFH2_9FIRM
L3_122_000M1_scaffold_89_27
unknown

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35374..35784
DNA (411bp) protein (137aa)

This feature has no annotations

L3_122_000M1_scaffold_89_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35975..36808)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5C7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67435.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_89_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36828..37841)
DNA (1014bp) protein (338aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCK4_9FIRM
vanY; putative D-alanyl-D-alanine carboxypeptidase
Putative D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCO04742.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_89_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(38034..40751)
DNA (2718bp) protein (906aa)
Agu2A n=1 Tax=Ruminococcus albus 8 RepID=F6LP89_RUMAL
Glycoside Hydrolase Family 2 protein
Glycoside Hydrolase Family 2 protein {ECO:0000313|EMBL:CCO04743.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 91 in total

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