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L3_122_000M1_scaffold_94

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_94_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..135)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T048_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65595.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_94_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(144..977)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U476_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65597.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_94_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1766..2137)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T8V6_9FIRM
rpsD; ribosomal protein S4
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_94_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2204..2713)
DNA (510bp) protein (170aa)
50S ribosomal protein L10 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY91_9FIRM
rplJ; ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2953..3378)
DNA (426bp) protein (142aa)
atpC; ATP synthase F1, epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5P8_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3406..4851)
DNA (1446bp) protein (482aa)
atpD; ATP synthase F1, beta subunit (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347, ECO:0000313|EMBL:CCO05520.1};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP synthase subunit beta n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TE54_9FIRM
L3_122_000M1_scaffold_94_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4829..5713)
DNA (885bp) protein (295aa)
atpG; ATP synthase F1, gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1S1_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5743..7248)
DNA (1506bp) protein (502aa)
atpA; ATP synthase F1, alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000313|EMBL:CCO05518.1};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP synthase subunit alpha n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C730_9FIRM
L3_122_000M1_scaffold_94_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7254..7760)
DNA (507bp) protein (169aa)
atpH; ATP synthase F1, subunit delta (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TE47_9FIRM
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7757..8242)
DNA (486bp) protein (162aa)
atpF; ATP synthase FO, subunit B (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T8U0_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8277..8495)
DNA (219bp) protein (73aa)
atpE; ATP synthase FO, subunit C (EC:3.6.3.14)
ATP synthase F0 C subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5N9_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8543..8761)
DNA (219bp) protein (73aa)
atpE; ATP synthase FO, subunit C (EC:3.6.3.14)
ATP synthase F0 C subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5N9_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8789..9484)
DNA (696bp) protein (232aa)
atpB; ATP synthase F0, subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY74_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9761..10666
DNA (906bp) protein (302aa)
Transcriptional regulator LysR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5N6_9FIRM
Transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCO05512.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10945..11844)
DNA (900bp) protein (300aa)
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1Q1_9FIRM
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:CDC66120.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_94_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11916..12368)
DNA (453bp) protein (151aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY70_9FIRM
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:CDC66118.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Transcriptional regulator, Rrf2 family
L3_122_000M1_scaffold_94_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12564..13877
DNA (1314bp) protein (438aa)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:CCO05509.1}; EC=2.5.1.49 {ECO:0000313|EMBL:CCO05509.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
O-acetylhomoserine sulfhydrylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5N2_9FIRM
L3_122_000M1_scaffold_94_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13890..14753
DNA (864bp) protein (288aa)
Dissimilatory sulfite reductase (Desulfoviridin) alpha and beta subunits n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T8S7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05508.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14746..14991
DNA (246bp) protein (82aa)
Predicted redox protein regulator of disulfide bond formation n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5M9_9FIRM
hypothetical protein
Predicted redox protein regulator of disulfide bond formation {ECO:0000313|EMBL:CDC66112.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_94_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14991..15308
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1P0_9FIRM
trxA2; Thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077, ECO:0000313|EMBL:CCO05506.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15322..15528
DNA (207bp) protein (69aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY62_9FIRM
thiS; thiamine biosynthesis ThiS
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:CDC66108.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_94_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15528..16340
DNA (813bp) protein (271aa)
HesA/MoeB/ThiF family protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CMH7_9FIRM
thiF; thiazole biosynthesis adenylyltransferase ThiF
Thiazole biosynthesis adenylyltransferase ThiF {ECO:0000313|EMBL:CCO05504.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16337..16747
DNA (411bp) protein (137aa)
Predicted metal-dependent protease of the PAD1/JAB1 superfamily n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TE26_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05503.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16921..18198)
DNA (1278bp) protein (426aa)
Glycoside Hydrolase Family 5 protein (EC:3.2.1.4)
Cellulase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1M7_9FIRM
Cellulase {ECO:0000313|EMBL:CDC66095.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_94_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18455..19624
DNA (1170bp) protein (390aa)
Cation diffusion facilitator family transporter n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5L6_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05501.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19722..19925
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1M1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05500.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20001..20678
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus 8 RepID=E9SGD3_RUMAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05499.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_94_28
unknown

Not on your lists

20701..21186
DNA (486bp) protein (162aa)

This feature has no annotations

L3_122_000M1_scaffold_94_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21170..21931
DNA (762bp) protein (254aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1K8_9FIRM
hypothetical protein
L3_122_000M1_scaffold_94_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21948..23699
DNA (1752bp) protein (584aa)
Fibronectin-binding A domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5K4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05497.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 97 in total

View Taxonomy