ggKbase home page

L3_122_000M1_scaffold_110

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_110_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

L3_122_000M1_scaffold_110_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(441..869)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66256.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_110_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(859..1305)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U5Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66257.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_110_4
unknown

Not on your lists

comp(1462..1659)
DNA (198bp) protein (66aa)

This feature has no annotations

L3_122_000M1_scaffold_110_5
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2216..4045)
DNA (1830bp) protein (610aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MN09_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41955.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_122_000M1_scaffold_110_6
Listeria weihenstephanensis, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4042..5121)
DNA (1080bp) protein (360aa)
type II restriction endonuclease HpaII n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI0002559DE2
Type II restriction endonuclease HpaII {ECO:0000313|EMBL:EUJ36014.1}; TaxID=1265845 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria weihenstephanensis FSL R9-0317.;"
restriction endonuclease HpaII
L3_122_000M1_scaffold_110_7
Fictibacillus macauensis, Fictibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5134..5412)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Bacillus macauensis ZFHKF-1 RepID=I8AIS3_9BACI
Uncharacterized protein {ECO:0000313|EMBL:EIT85384.1}; TaxID=1196324 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Fictibacillus.;" source="Bacillus macauensis ZFHKF-1.;"
hypothetical protein
L3_122_000M1_scaffold_110_8
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5523..6143)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDN3_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA43406.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
L3_122_000M1_scaffold_110_9
Listeria weihenstephanensis, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6143..7270)
DNA (1128bp) protein (376aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1265845 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria weihenstephanensis FSL R9-0317.;"
Cytosine-specific methyltransferase n=1 Tax=Bacillus thuringiensis subsp. konkukian (strain 97-27) RepID=Q6HMN7_BACHK
hpaII; modification methylase HpaII (cytosine-specific methyltransferase HpaII)
L3_122_000M1_scaffold_110_10
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7286..8230)
DNA (945bp) protein (315aa)
AAA domain protein n=2 Tax=root RepID=R6VK16_9CLOT
AAA domain protein {ECO:0000313|EMBL:CDC82817.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
DNA-cytosine methyltransferase
L3_122_000M1_scaffold_110_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8227..8640)
DNA (414bp) protein (138aa)
T/G mismatch-specific endonuclease (EC:3.1.-.-)
Putative modification methylase HpaII n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MR75_9FIRM
Putative modification methylase HpaII {ECO:0000313|EMBL:EDR99731.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_122_000M1_scaffold_110_12
unknown

Not on your lists

9259..9402
DNA (144bp) protein (48aa)

This feature has no annotations

L3_122_000M1_scaffold_110_13
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9403..11031)
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75197.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_122_000M1_scaffold_110_14
unknown

Not on your lists

comp(11151..11357)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_122_000M1_scaffold_110_15
unknown

Not on your lists

comp(11344..11574)
DNA (231bp) protein (77aa)

This feature has no annotations

L3_122_000M1_scaffold_110_16
unknown

Not on your lists

comp(11543..11734)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_122_000M1_scaffold_110_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11828..12274)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBX7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC67184.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_110_18
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12494..13093)
DNA (600bp) protein (200aa)
Putative cyclase n=1 Tax=Ruminococcus albus 8 RepID=E9S953_RUMAL
Putative cyclase {ECO:0000313|EMBL:EGC04187.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
cyclase family protein
L3_122_000M1_scaffold_110_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13161..14594)
DNA (1434bp) protein (478aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CF09_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05234.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_110_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14827..15942)
DNA (1116bp) protein (372aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SWE9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05226.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_110_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15956..17122)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6X1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05225.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_110_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17122..18375)
DNA (1254bp) protein (418aa)
Uncharacterized protein/domain associated with GTPase-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCE2_9FIRM
Uncharacterized protein/domain associated with GTPase-like protein {ECO:0000313|EMBL:CDC65496.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_110_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18693..19031
DNA (339bp) protein (113aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6Z6_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDC65499.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_110_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19175..19297)
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZX1_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05222.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_110_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19334..19492)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65500.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_110_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19503..20444)
DNA (942bp) protein (314aa)
Class II glutamine amidotransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCF0_9FIRM
Class II glutamine amidotransferase {ECO:0000313|EMBL:CDC65501.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_110_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20447..21559)
DNA (1113bp) protein (371aa)
LIM zinc-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SWI3_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05220.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_110_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21614..21709)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T708_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05219.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_110_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21847..22020
DNA (174bp) protein (58aa)
DNA binding domain-containing protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U418_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05218.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_110_30
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22183..26937
DNA (4755bp) protein (1585aa)
RecQ family ATP-dependent DNA helicase n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9K9Q3_9FIRM
RecQ family ATP-dependent DNA helicase {ECO:0000313|EMBL:EOS43159.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
RecQ familyATP-dependent DNA helicase
Displaying items 1-30 of 90 in total

View Taxonomy