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L3_122_000M1_scaffold_128

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_122_000M1_scaffold_128_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..116
DNA (114bp) protein (38aa)
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05313.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

954..1631
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB08_9FIRM
Two-component system transcriptional regulator
Response regulator receiver domain protein {ECO:0000313|EMBL:CDC66889.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_128_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1720..2706
DNA (987bp) protein (329aa)
Two-component system sensor histidine kinase (EC:2.7.3.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Signal transduction histidine kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3V6_9FIRM
L3_122_000M1_scaffold_128_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2756..3364)
DNA (609bp) protein (203aa)
Protein involved in cell division n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG99_9FIRM
fic; hypothetical protein
Protein involved in cell division {ECO:0000313|EMBL:CDC66891.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_128_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3389..4654)
DNA (1266bp) protein (422aa)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:CCO05317.1}; EC=2.5.1.49 {ECO:0000313|EMBL:CCO05317.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
O-acetylhomoserine/O-acetylserine sulfhydrylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7X1_9FIRM
L3_122_000M1_scaffold_128_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4772..5875)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0C3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66893.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_128_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5911..6528)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB14_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05319.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6657..8093)
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
purB; Adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0D0_9FIRM
L3_122_000M1_scaffold_128_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8385..8696
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB19_9FIRM
rplU; ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_122_000M1_scaffold_128_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8696..9016
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3W7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66900.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_128_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9052..9333
DNA (282bp) protein (94aa)
50S ribosomal protein L27 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGA8_9FIRM
rpsT; ribosomal protein S20
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9431..10708
DNA (1278bp) protein (426aa)
GTPase Obg n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7Y4_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
cgtA; Obg family GTPase CgtA
L3_122_000M1_scaffold_128_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10738..11127
DNA (390bp) protein (130aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Mini-ribonuclease 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0D5_9FIRM
conserved hypothetical protein
L3_122_000M1_scaffold_128_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11151..11894
DNA (744bp) protein (248aa)
Probable transcriptional regulatory protein BN714_02261 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB26_9FIRM
DNA-binding regulatory protein, YebC/PmpR family
Probable transcriptional regulatory protein RBI_I01628 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12130..12663
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3X1_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05331.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12875..14221
DNA (1347bp) protein (449aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGB3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05332.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14413..15849)
DNA (1437bp) protein (479aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7Z0_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:CDC66907.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_122_000M1_scaffold_128_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16016..18349)
DNA (2334bp) protein (778aa)
cadmium-translocating P-type ATPase (EC:3.6.3.3)
Cadmium-translocating P-type ATPase {ECO:0000313|EMBL:CCO05334.1}; EC=3.6.3.3 {ECO:0000313|EMBL:CCO05334.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Cadmium-exporting ATPase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T186_9FIRM
L3_122_000M1_scaffold_128_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18390..18755)
DNA (366bp) protein (122aa)
Transcriptional regulator ArsR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8U9_9FIRM
cadC; Cadmium efflux system accessory protein homolog
Cadmium efflux system accessory protein homolog {ECO:0000313|EMBL:CCO05335.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19428..20099
DNA (672bp) protein (224aa)
Channel protein hemolysin III family n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C6L9_9FIRM
hlyIII; channel protein, hemolysin III family
Channel protein, hemolysin III family {ECO:0000313|EMBL:CCO05337.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_122_000M1_scaffold_128_21
unknown

Not on your lists

comp(20144..20665)
DNA (522bp) protein (174aa)

This feature has no annotations

L3_122_000M1_scaffold_128_22
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20662..20865)
DNA (204bp) protein (68aa)
Predicted transcriptional regulators n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LB18_RUMC1
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL16813.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_122_000M1_scaffold_128_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21163..22641
DNA (1479bp) protein (493aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
malQ; 4-alpha-glucanotransferase (Glycoside Hydrolase Family 77 protein ) (EC:2.4.1.25)
4-alpha-glucanotransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAP0_9FIRM
L3_122_000M1_scaffold_128_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23334..25715
DNA (2382bp) protein (794aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587, ECO:0000313|EMBL:CCO05339.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
malP; maltodextrin phosphorylase (Glycosyltransferase Family 35 protein ) (EC:2.4.1.1)
Phosphorylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TJ25_9FIRM
L3_122_000M1_scaffold_128_25
unknown

Not on your lists

25733..25831
DNA (99bp) protein (33aa)

This feature has no annotations

L3_122_000M1_scaffold_128_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25932..26486
DNA (555bp) protein (185aa)
Phosphatidylglycerophosphatase (EC:3.6.1.27)
Phosphatidylglycerophosphatase {ECO:0000313|EMBL:CCO05340.1}; EC=3.6.1.27 {ECO:0000313|EMBL:CCO05340.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Membrane-associated phospholipid phosphatase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6K4_9FIRM
L3_122_000M1_scaffold_128_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26606..27406
DNA (801bp) protein (267aa)
Polysaccharide deacetylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDR7_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:CDC67849.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Polysaccharide deacetylase (Carbohydrate Esterase Family 4 protein )
L3_122_000M1_scaffold_128_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27458..28453)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T340_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67848.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_128_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28472..29467)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67847.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_122_000M1_scaffold_128_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29509..30660)
DNA (1152bp) protein (384aa)
GumN protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TJ20_9FIRM
GumN family protein
GumN family protein {ECO:0000313|EMBL:CCO05343.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 84 in total

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